Wall clock time and date at job start Sun Mar 29 2020 21:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99752 * 2 1 4 4 C 1.50693 * 109.46896 * 269.99727 * 3 2 1 5 5 H 1.07995 * 120.00752 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99639 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00095 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99592 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47325 * 59.99776 * 8 6 4 10 10 H 1.48506 * 109.46950 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47141 * 299.99277 * 8 6 4 12 12 C 1.34772 * 120.00434 * 179.97438 * 2 1 3 13 13 O 1.21548 * 120.00563 * 184.78935 * 12 2 1 14 14 C 1.47839 * 119.99633 * 4.79250 * 12 2 1 15 15 C 1.39952 * 120.94024 * 322.12509 * 14 12 2 16 16 N 1.32141 * 118.92165 * 179.75049 * 15 14 12 17 17 C 1.31864 * 120.97152 * 0.25617 * 16 15 14 18 18 N 1.31871 * 122.09521 * 359.97438 * 17 16 15 19 19 C 1.32141 * 120.96569 * 0.02562 * 18 17 16 20 20 H 1.08992 * 109.47729 * 264.80787 * 1 2 3 21 21 H 1.08998 * 109.47324 * 24.81773 * 1 2 3 22 22 H 1.09004 * 109.46742 * 144.80953 * 1 2 3 23 23 H 1.09003 * 109.47263 * 29.99830 * 3 2 1 24 24 H 1.08998 * 109.47025 * 149.99548 * 3 2 1 25 25 H 0.97001 * 119.99499 * 179.97438 * 7 6 4 26 26 H 1.08008 * 120.53551 * 0.02642 * 15 14 12 27 27 H 1.07996 * 118.95615 * 179.97438 * 17 16 15 28 28 H 1.08003 * 120.53769 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6731 8 14 3.4376 3.4170 -3.4339 9 1 2.1398 3.5953 -4.1333 10 1 4.1801 4.7031 -3.4339 11 1 4.2394 2.3819 -4.1345 12 6 2.1389 -1.1671 0.0005 13 8 3.3512 -1.1689 0.0884 14 6 1.4036 -2.4453 -0.1059 15 6 0.1733 -2.6232 0.5369 16 7 -0.4521 -3.7805 0.4109 17 6 0.0691 -4.7593 -0.3027 18 7 1.2274 -4.6358 -0.9207 19 6 1.9205 -3.5131 -0.8483 20 1 -0.3634 -0.0930 1.0233 21 1 -0.3634 0.9327 -0.4313 22 1 -0.3633 -0.8399 -0.5923 23 1 1.6083 2.0284 0.5138 24 1 3.1498 1.1385 0.5139 25 1 4.0315 4.4432 -0.8504 26 1 -0.2601 -1.8261 1.1228 27 1 -0.4698 -5.6917 -0.3835 28 1 2.8682 -3.4194 -1.3576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230879556.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:50 Heat of formation + Delta-G solvation = 24.208868 kcal Electronic energy + Delta-G solvation = -14519.646423 eV Core-core repulsion = 11957.521084 eV Total energy + Delta-G solvation = -2562.125339 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14162 -38.78467 -35.18557 -33.77009 -32.91450 -31.92193 -28.00641 -26.45055 -24.87858 -24.41067 -22.70253 -19.37029 -17.75711 -17.56750 -16.66811 -16.59193 -15.45361 -14.89585 -14.36690 -14.22185 -13.87202 -13.63083 -13.18142 -12.49420 -12.25994 -11.89135 -11.51857 -11.29121 -11.01700 -10.82892 -10.64409 -10.24819 -9.81552 -9.61158 -9.34017 -9.19718 -8.50848 -7.84755 -6.12383 -4.18197 0.58836 0.99339 3.16407 3.27721 3.32434 3.35582 3.61575 3.86344 4.04685 4.12964 4.37832 4.50519 4.76728 5.04323 5.22341 5.28022 5.46315 5.65207 5.77168 6.05354 6.24765 6.76348 6.91804 7.29796 7.36711 7.82660 7.93823 8.11802 8.16661 8.70650 8.88593 9.47279 10.95686 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045594 B = 0.007053 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.966506 B = 3969.100438 C = 4121.718011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.590 5.590 3 C 0.244 3.756 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.554 3.446 13 O -0.528 6.528 14 C -0.220 4.220 15 C 0.167 3.833 16 N -0.525 5.525 17 C 0.297 3.703 18 N -0.523 5.523 19 C 0.196 3.804 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.265 0.735 26 H 0.180 0.820 27 H 0.197 0.803 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -10.729 1.371 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.126 3.874 4 C -0.572 4.572 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.339 3.661 13 O -0.405 6.405 14 C -0.228 4.228 15 C 0.001 3.999 16 N -0.238 5.238 17 C 0.009 3.991 18 N -0.237 5.237 19 C 0.030 3.970 20 H 0.070 0.930 21 H 0.101 0.899 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.197 0.803 27 H 0.214 0.786 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.209 -11.373 1.390 14.095 hybrid contribution 0.526 1.182 -0.942 1.600 sum -7.684 -10.191 0.448 12.771 Atomic orbital electron populations 1.21999 0.81464 1.03447 1.00021 1.48109 1.06249 1.07614 1.70143 1.19411 0.92774 0.77424 0.97816 1.21366 1.37136 1.06599 0.92069 0.92438 1.24932 0.95164 0.96269 0.97577 1.69917 1.37969 1.14359 1.30878 0.86533 0.78417 0.77903 0.84435 1.20204 1.21088 1.20100 1.17726 0.87056 0.82766 0.78592 1.90784 1.13136 1.86746 1.49862 1.22128 0.98522 0.98713 1.03412 1.23955 0.89185 0.94445 0.92302 1.68467 1.35588 1.01338 1.18427 1.25117 0.89076 0.97470 0.87410 1.68503 1.08484 1.25186 1.21497 1.23436 0.97634 0.85863 0.90093 0.93010 0.89896 0.92471 0.94492 0.93358 0.92505 0.80329 0.78635 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 8.87 59.85 0.53 1.64 15 2 N -0.59 -11.98 2.86 -184.09 -0.53 -12.51 15 3 C 0.24 6.15 5.17 -5.20 -0.03 6.12 15 4 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 15 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 15 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 7 N -0.89 -25.89 13.29 55.43 0.74 -25.16 15 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 15 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 C 0.55 11.27 7.40 -12.33 -0.09 11.17 15 13 O -0.53 -12.89 16.48 5.32 0.09 -12.80 15 14 C -0.22 -3.52 5.29 -104.69 -0.55 -4.07 15 15 C 0.17 2.25 8.87 -16.78 -0.15 2.10 15 16 N -0.52 -6.76 10.42 -14.24 -0.15 -6.91 15 17 C 0.30 3.53 12.27 -92.03 -1.13 2.40 15 18 N -0.52 -7.21 10.42 -14.25 -0.15 -7.35 15 19 C 0.20 2.95 10.95 -16.78 -0.18 2.77 15 20 H 0.05 0.61 6.88 -51.93 -0.36 0.25 15 21 H 0.08 1.26 8.03 -51.93 -0.42 0.84 15 22 H 0.06 0.76 5.83 -51.93 -0.30 0.46 15 23 H 0.04 0.93 8.07 -51.93 -0.42 0.51 15 24 H 0.05 1.37 7.36 -51.93 -0.38 0.99 15 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 26 H 0.18 2.03 5.28 -52.48 -0.28 1.76 15 27 H 0.20 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.18 2.53 8.06 -52.48 -0.42 2.11 15 LS Contribution 251.69 15.07 3.79 3.79 Total: -1.00 -32.26 251.69 -5.80 -38.05 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -2.55 Total: -2.28 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.02 Total: 8.81 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.26 -5.80 -38.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230879556.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.261 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds