Wall clock time and date at job start Sun Mar 29 2020 21:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99752 * 2 1 4 4 C 1.50693 * 109.46896 * 269.99727 * 3 2 1 5 5 H 1.07995 * 120.00752 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99639 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00095 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99592 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47325 * 59.99776 * 8 6 4 10 10 H 1.48506 * 109.46950 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47141 * 299.99277 * 8 6 4 12 12 C 1.34772 * 120.00434 * 179.97438 * 2 1 3 13 13 O 1.21548 * 120.00563 * 184.78935 * 12 2 1 14 14 C 1.47839 * 119.99633 * 4.79250 * 12 2 1 15 15 C 1.39952 * 120.94024 * 322.12509 * 14 12 2 16 16 N 1.32141 * 118.92165 * 179.75049 * 15 14 12 17 17 C 1.31864 * 120.97152 * 0.25617 * 16 15 14 18 18 N 1.31871 * 122.09521 * 359.97438 * 17 16 15 19 19 C 1.32141 * 120.96569 * 0.02562 * 18 17 16 20 20 H 1.08992 * 109.47729 * 264.80787 * 1 2 3 21 21 H 1.08998 * 109.47324 * 24.81773 * 1 2 3 22 22 H 1.09004 * 109.46742 * 144.80953 * 1 2 3 23 23 H 1.09003 * 109.47263 * 29.99830 * 3 2 1 24 24 H 1.08998 * 109.47025 * 149.99548 * 3 2 1 25 25 H 0.97001 * 119.99499 * 179.97438 * 7 6 4 26 26 H 1.08008 * 120.53551 * 0.02642 * 15 14 12 27 27 H 1.07996 * 118.95615 * 179.97438 * 17 16 15 28 28 H 1.08003 * 120.53769 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6731 8 14 3.4376 3.4170 -3.4339 9 1 2.1398 3.5953 -4.1333 10 1 4.1801 4.7031 -3.4339 11 1 4.2394 2.3819 -4.1345 12 6 2.1389 -1.1671 0.0005 13 8 3.3512 -1.1689 0.0884 14 6 1.4036 -2.4453 -0.1059 15 6 0.1733 -2.6232 0.5369 16 7 -0.4521 -3.7805 0.4109 17 6 0.0691 -4.7593 -0.3027 18 7 1.2274 -4.6358 -0.9207 19 6 1.9205 -3.5131 -0.8483 20 1 -0.3634 -0.0930 1.0233 21 1 -0.3634 0.9327 -0.4313 22 1 -0.3633 -0.8399 -0.5923 23 1 1.6083 2.0284 0.5138 24 1 3.1498 1.1385 0.5139 25 1 4.0315 4.4432 -0.8504 26 1 -0.2601 -1.8261 1.1228 27 1 -0.4698 -5.6917 -0.3835 28 1 2.8682 -3.4194 -1.3576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230879556.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:50 Heat of formation + Delta-G solvation = 1.886473 kcal Electronic energy + Delta-G solvation = -14520.614395 eV Core-core repulsion = 11957.521084 eV Total energy + Delta-G solvation = -2563.093311 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29165 -40.32589 -36.84257 -35.07051 -34.65562 -33.29312 -29.82740 -27.85035 -26.36225 -25.51808 -24.44919 -20.90194 -18.90403 -18.72604 -18.61867 -18.06077 -17.16236 -16.38989 -16.13674 -15.52871 -14.97392 -14.80526 -14.69093 -14.24385 -13.82949 -13.46508 -13.06467 -12.87623 -12.72241 -12.55924 -12.22291 -11.89368 -11.76510 -10.98264 -10.69267 -10.63589 -10.41344 -9.55023 -8.24226 -6.39057 -0.53253 -0.10365 1.37852 1.41328 1.48534 1.68978 2.15390 2.39475 2.69193 3.04916 3.06125 3.11320 3.37944 3.47367 3.87255 4.23154 4.34436 4.54153 4.68930 4.86112 4.96715 5.19869 5.22044 5.48444 5.72366 5.75922 6.01990 6.54461 6.69302 6.89625 7.14764 7.33720 8.82891 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045594 B = 0.007053 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.966506 B = 3969.100438 C = 4121.718011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.596 5.596 3 C 0.258 3.742 4 C -0.548 4.548 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.552 3.448 13 O -0.584 6.584 14 C -0.239 4.239 15 C 0.185 3.815 16 N -0.525 5.525 17 C 0.308 3.692 18 N -0.531 5.531 19 C 0.195 3.805 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.005 0.995 25 H 0.268 0.732 26 H 0.202 0.798 27 H 0.240 0.760 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -11.937 0.690 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.326 5.326 3 C 0.137 3.863 4 C -0.587 4.587 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.339 3.661 13 O -0.465 6.465 14 C -0.246 4.246 15 C 0.018 3.982 16 N -0.238 5.238 17 C 0.022 3.978 18 N -0.245 5.245 19 C 0.029 3.971 20 H 0.108 0.892 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.052 0.948 24 H 0.023 0.977 25 H 0.077 0.923 26 H 0.218 0.782 27 H 0.256 0.744 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.352 -12.606 0.708 16.327 hybrid contribution 1.108 1.459 -0.682 1.955 sum -9.244 -11.147 0.026 14.481 Atomic orbital electron populations 1.22312 0.77906 1.04190 1.02845 1.48065 1.08447 1.06125 1.69918 1.18898 0.91503 0.79592 0.96313 1.21655 1.37293 1.06775 0.92931 0.92809 1.25818 0.94790 0.96352 1.01872 1.70031 1.38604 1.14808 1.33051 0.85488 0.78821 0.77399 0.79241 1.18567 1.20374 1.20285 1.18306 0.86640 0.84017 0.77130 1.90742 1.15716 1.87719 1.52305 1.21678 0.99871 0.96750 1.06334 1.24228 0.87731 0.95213 0.91007 1.68636 1.35277 1.01186 1.18719 1.26031 0.88179 0.98450 0.85162 1.68617 1.09292 1.24261 1.22282 1.23449 0.97740 0.86127 0.89802 0.89223 0.90294 0.90387 0.94806 0.97686 0.92282 0.78207 0.74435 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 8.87 127.77 1.13 3.05 15 2 N -0.60 -24.33 2.86 -854.61 -2.44 -26.77 15 3 C 0.26 13.41 5.17 85.63 0.44 13.86 15 4 C -0.55 -30.73 9.39 25.60 0.24 -30.49 15 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 15 6 C 0.01 0.63 5.46 84.66 0.46 1.10 15 7 N -0.93 -54.74 13.29 21.45 0.28 -54.46 15 8 Si 0.97 43.93 29.54 68.60 2.03 45.96 15 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 12 C 0.55 22.83 7.40 86.79 0.64 23.47 15 13 O -0.58 -29.87 16.48 -3.87 -0.06 -29.94 15 14 C -0.24 -7.39 5.29 -19.91 -0.11 -7.49 15 15 C 0.18 4.44 8.87 85.06 0.75 5.20 15 16 N -0.52 -11.57 10.42 -198.98 -2.07 -13.64 15 17 C 0.31 6.18 12.27 180.84 2.22 8.40 15 18 N -0.53 -13.36 10.42 -198.98 -2.07 -15.44 15 19 C 0.20 5.70 10.95 85.06 0.93 6.63 15 20 H 0.09 1.82 6.88 -2.39 -0.02 1.81 15 21 H 0.08 2.27 8.03 -2.39 -0.02 2.26 15 22 H 0.08 1.85 5.83 -2.38 -0.01 1.84 15 23 H 0.03 1.75 8.07 -2.39 -0.02 1.74 15 24 H 0.01 0.30 7.36 -2.39 -0.02 0.28 15 25 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 26 H 0.20 3.81 5.28 -2.91 -0.02 3.80 15 27 H 0.24 2.57 8.06 -2.91 -0.02 2.54 15 28 H 0.17 5.04 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -71.66 251.69 3.56 -68.11 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.18 Total: 2.46 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 6.72 Total: 23.72 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -6.30 Total: -110.30 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.94 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.66 3.56 -68.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230879556.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.992 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds