Wall clock time and date at job start Sun Mar 29 2020 21:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37875 * 120.00120 * 65.37261 * 4 2 1 7 7 N 1.31515 * 119.99748 * 184.89036 * 6 4 2 8 8 Si 1.86794 * 120.00196 * 5.16703 * 6 4 2 9 9 H 1.48500 * 109.47373 * 269.72603 * 8 6 4 10 10 H 1.48505 * 109.47126 * 29.72474 * 8 6 4 11 11 H 1.48499 * 109.47207 * 149.72425 * 8 6 4 12 12 N 1.46495 * 109.47130 * 120.00222 * 2 1 3 13 13 C 1.34777 * 120.00120 * 274.99902 * 12 2 1 14 14 O 1.21554 * 120.00024 * 0.02562 * 13 12 2 15 15 C 1.47827 * 120.00336 * 179.97438 * 13 12 2 16 16 C 1.39947 * 120.93861 * 359.72380 * 15 13 12 17 17 N 1.32148 * 118.92514 * 179.71846 * 16 15 13 18 18 C 1.31866 * 120.96403 * 0.56459 * 17 16 15 19 19 N 1.31869 * 122.09760 * 359.70577 * 18 17 16 20 20 C 1.32143 * 120.96620 * 359.97438 * 19 18 17 21 21 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 22 22 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 23 23 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 24 24 H 0.97000 * 120.00553 * 355.27176 * 7 6 4 25 25 H 0.96997 * 120.00507 * 94.99817 * 12 2 1 26 26 H 1.08004 * 120.54039 * 359.97438 * 16 15 13 27 27 H 1.08008 * 118.95436 * 179.72642 * 18 17 16 28 28 H 1.08003 * 120.53563 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4797 7 7 2.1461 -0.8447 -3.5570 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3176 -2.7140 10 1 1.3161 2.3282 -1.4625 11 1 1.4542 2.1615 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1610 2.4119 15 6 2.6393 -0.7153 3.5642 16 6 2.9718 -2.0742 3.5252 17 7 3.4133 -2.6561 4.6264 18 6 3.5313 -1.9783 5.7514 19 7 3.2241 -0.6985 5.8339 20 6 2.7810 -0.0363 4.7797 21 1 -0.3633 -1.0237 -0.0900 22 1 -0.3633 0.4339 0.9316 23 1 -0.3633 0.5898 -0.8416 24 1 2.6359 -1.6778 -3.4732 25 1 2.2490 -1.6318 1.1526 26 1 2.8732 -2.6372 2.6088 27 1 3.8913 -2.4874 6.6333 28 1 2.5319 1.0119 4.8550 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230879866.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:44 Heat of formation + Delta-G solvation = -14.622883 kcal Electronic energy + Delta-G solvation = -14395.891521 eV Core-core repulsion = 11832.082311 eV Total energy + Delta-G solvation = -2563.809210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.25720 -40.40963 -36.95969 -35.05281 -34.48491 -33.51656 -31.30058 -26.95676 -26.32856 -25.62324 -23.06435 -21.54681 -20.10472 -18.98587 -18.68378 -18.10306 -17.01375 -16.37897 -15.92674 -15.38118 -15.18693 -14.72401 -14.70012 -14.55785 -14.26349 -13.58030 -13.39152 -12.78918 -12.47073 -12.01697 -11.98121 -11.69041 -11.06291 -10.95591 -10.89389 -10.71299 -10.44520 -10.03179 -8.79384 -6.48945 -0.66385 -0.13167 1.43312 1.53198 1.69562 1.77182 2.17220 2.41310 2.71427 2.98440 3.03997 3.07871 3.33769 3.62169 3.84536 4.29143 4.47950 4.61790 4.65654 4.72319 5.01120 5.16845 5.39576 5.48034 5.58405 5.69873 5.98192 6.48193 6.63360 6.85909 7.15753 7.30460 8.60996 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053233 B = 0.006905 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.858364 B = 4053.927126 C = 4390.795452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.237 3.763 3 H 0.032 0.968 4 C -0.605 4.605 5 H 0.044 0.956 6 C -0.010 4.010 7 N -0.935 5.935 8 Si 1.081 2.919 9 H -0.257 1.257 10 H -0.263 1.263 11 H -0.289 1.289 12 N -0.692 5.692 13 C 0.558 3.442 14 O -0.578 6.578 15 C -0.244 4.244 16 C 0.189 3.811 17 N -0.531 5.531 18 C 0.312 3.688 19 N -0.532 5.532 20 C 0.206 3.794 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.258 0.742 25 H 0.405 0.595 26 H 0.188 0.812 27 H 0.239 0.761 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -1.974 15.817 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.133 3.867 3 H 0.050 0.950 4 C -0.643 4.643 5 H 0.063 0.937 6 C -0.209 4.209 7 N -0.570 5.570 8 Si 0.904 3.096 9 H -0.183 1.183 10 H -0.188 1.188 11 H -0.216 1.216 12 N -0.340 5.340 13 C 0.344 3.656 14 O -0.460 6.460 15 C -0.252 4.252 16 C 0.022 3.978 17 N -0.245 5.245 18 C 0.027 3.973 19 N -0.245 5.245 20 C 0.039 3.961 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.241 0.759 26 H 0.205 0.795 27 H 0.255 0.745 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.187 -0.570 15.546 15.558 hybrid contribution 0.614 -1.371 -0.144 1.509 sum 0.426 -1.941 15.402 15.530 Atomic orbital electron populations 1.22299 0.97248 1.01628 1.00042 1.19004 0.91727 0.93602 0.82396 0.95046 1.22325 1.39721 1.09952 0.92335 0.93730 1.26855 0.96556 1.05873 0.91665 1.70933 1.37865 1.17039 1.31211 0.83535 0.77234 0.72415 0.76390 1.18266 1.18823 1.21565 1.46021 1.64569 1.14285 1.09143 1.18190 0.77836 0.86270 0.83311 1.90728 1.52878 1.16824 1.85523 1.21709 1.08862 0.97791 0.96832 1.23793 0.85938 0.90257 0.97774 1.68593 1.15472 1.40174 1.00218 1.26051 0.88023 0.86918 0.96340 1.68662 1.13728 1.10952 1.31148 1.23631 0.85594 1.01052 0.85844 0.92267 0.93439 0.93096 0.93251 0.75941 0.79491 0.74497 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.34 9.07 71.98 0.65 -5.69 15 2 C 0.24 10.77 2.14 44.25 0.09 10.86 15 3 H 0.03 1.58 6.08 -2.39 -0.01 1.56 15 4 C -0.61 -31.71 9.10 25.60 0.23 -31.48 15 5 H 0.04 2.45 7.95 -2.91 -0.02 2.42 15 6 C -0.01 -0.53 5.43 84.65 0.46 -0.07 15 7 N -0.93 -55.62 13.70 21.45 0.29 -55.33 15 8 Si 1.08 49.27 25.28 68.60 1.73 51.01 15 9 H -0.26 -10.73 6.82 99.48 0.68 -10.05 15 10 H -0.26 -11.48 6.35 99.48 0.63 -10.85 15 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 15 12 N -0.69 -25.79 5.03 -449.00 -2.26 -28.05 15 13 C 0.56 19.87 7.75 86.78 0.67 20.55 15 14 O -0.58 -24.38 16.11 -3.89 -0.06 -24.44 15 15 C -0.24 -6.73 5.91 -19.91 -0.12 -6.85 15 16 C 0.19 4.45 10.81 85.06 0.92 5.37 15 17 N -0.53 -11.73 10.42 -198.97 -2.07 -13.80 15 18 C 0.31 5.94 12.27 180.84 2.22 8.16 15 19 N -0.53 -12.05 10.42 -198.98 -2.07 -14.12 15 20 C 0.21 5.20 10.88 85.06 0.93 6.13 15 21 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.05 2.10 4.41 -2.39 -0.01 2.09 15 24 H 0.26 15.37 8.72 -92.71 -0.81 14.56 15 25 H 0.40 12.92 6.66 -92.71 -0.62 12.31 15 26 H 0.19 3.68 6.54 -2.91 -0.02 3.66 15 27 H 0.24 2.39 8.06 -2.91 -0.02 2.37 15 28 H 0.19 4.41 7.74 -2.91 -0.02 4.39 15 Total: -1.00 -65.77 247.03 2.06 -63.71 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.44 Total: 14.06 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.06 Total: 6.98 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -6.11 Total: -111.31 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 1.73 Total: 51.01 kcal Total: -65.77 2.06 -63.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230879866.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.087 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds