Wall clock time and date at job start Sun Mar 29 2020 22:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47084 * 2 1 4 4 C 1.46506 * 119.99592 * 270.00002 * 3 2 1 5 5 C 1.50700 * 109.46672 * 269.99709 * 4 3 2 6 6 H 1.08006 * 120.00389 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99783 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47414 * 60.00107 * 9 7 5 11 11 H 1.48500 * 109.46628 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47062 * 299.99712 * 9 7 5 13 13 C 1.39042 * 120.00474 * 89.99489 * 3 2 1 14 14 C 1.39486 * 120.15576 * 5.00332 * 13 3 2 15 15 C 1.38553 * 117.90290 * 180.25453 * 14 13 3 16 16 C 1.50704 * 120.98269 * 179.72189 * 15 14 13 17 17 C 1.38821 * 118.03864 * 359.46128 * 15 14 13 18 18 N 1.31791 * 120.01592 * 0.55211 * 17 15 14 19 19 N 1.28347 * 122.28037 * 359.71422 * 18 17 15 20 20 H 1.09003 * 109.46628 * 60.00706 * 1 2 3 21 21 H 1.09005 * 109.46699 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47142 * 300.00363 * 1 2 3 23 23 H 1.09000 * 109.47593 * 239.99523 * 2 1 3 24 24 H 1.09007 * 109.47089 * 119.99427 * 2 1 3 25 25 H 1.08998 * 109.47285 * 29.99311 * 4 3 2 26 26 H 1.08995 * 109.47109 * 149.99727 * 4 3 2 27 27 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.08002 * 121.04530 * 359.97424 * 14 13 3 29 29 H 1.08996 * 109.47124 * 89.99663 * 16 15 14 30 30 H 1.08992 * 109.47278 * 209.99699 * 16 15 14 31 31 H 1.09003 * 109.46559 * 329.99782 * 16 15 14 32 32 H 1.07998 * 119.99113 * 180.26337 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1254 -3.6182 9 14 5.9133 2.0953 -3.4175 10 1 6.1404 0.6386 -3.5946 11 1 6.1608 2.7954 -4.7035 12 1 6.8411 2.6189 -2.3829 13 6 2.2500 2.0368 1.2041 14 6 2.1191 1.3512 2.4117 15 6 2.3557 2.0513 3.5837 16 6 2.2280 1.3806 4.9273 17 6 2.7192 3.3873 3.4838 18 7 2.8196 3.9564 2.2993 19 7 2.5966 3.3155 1.2098 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.5818 1.6876 -2.0285 26 1 2.0955 3.1410 -1.1386 27 1 3.6753 3.5159 -4.4442 28 1 1.8376 0.3087 2.4327 29 1 3.1884 0.9504 5.2113 30 1 1.9243 2.1153 5.6728 31 1 1.4791 0.5907 4.8693 32 1 2.9152 3.9617 4.3770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233445509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:07 Heat of formation + Delta-G solvation = 56.855921 kcal Electronic energy + Delta-G solvation = -14888.879401 eV Core-core repulsion = 12464.002839 eV Total energy + Delta-G solvation = -2424.876562 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32032 -36.78370 -33.98912 -32.78277 -31.45902 -29.71778 -27.95834 -26.41753 -24.14790 -22.98383 -22.26668 -20.10654 -17.06399 -16.57744 -16.34960 -15.65672 -14.80853 -14.51311 -13.99153 -13.73654 -13.22221 -12.85004 -12.73585 -12.61896 -12.26085 -12.00198 -11.78838 -11.17792 -10.97906 -10.69703 -10.52082 -10.38065 -10.26853 -9.97761 -9.40426 -9.23373 -8.79356 -8.40355 -6.99827 -6.00314 -4.07016 1.42983 1.87930 3.32871 3.37583 3.40434 3.68149 4.32637 4.46285 4.81627 5.05583 5.14546 5.16229 5.28750 5.31906 5.46868 5.53683 5.59251 5.62776 5.82192 5.89453 5.99178 6.17752 6.27193 6.44257 6.53380 6.68115 7.09626 7.47464 7.83770 8.05374 8.19512 8.25925 8.95895 9.56878 9.66588 11.05662 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.008540 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.967163 B = 3278.090886 C = 3765.334008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.577 5.577 4 C 0.251 3.749 5 C -0.528 4.528 6 H 0.054 0.946 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.361 3.639 14 C -0.205 4.205 15 C -0.055 4.055 16 C -0.108 4.108 17 C -0.049 4.049 18 N -0.201 5.201 19 N -0.292 5.292 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.264 0.736 28 H 0.137 0.863 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 -6.647 12.727 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.286 5.286 4 C 0.132 3.868 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.119 3.881 14 C -0.239 4.239 15 C -0.065 4.065 16 C -0.166 4.166 17 C -0.219 4.219 18 N -0.042 5.042 19 N -0.146 5.146 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.211 -5.303 11.413 13.270 hybrid contribution 0.733 -1.470 0.467 1.708 sum -3.478 -6.773 11.880 14.110 Atomic orbital electron populations 1.22227 0.96756 1.01370 1.02425 1.21401 0.93432 0.83119 1.02634 1.47149 1.65127 1.12135 1.04156 1.19372 0.96063 0.93881 0.77473 1.21400 0.96920 1.32050 1.06288 0.92730 1.24902 0.97709 0.94894 0.96348 1.69915 1.35669 1.33275 1.14337 0.86587 0.84969 0.78159 0.77868 1.20367 1.21118 1.20214 1.20121 0.89821 0.91079 0.87123 1.21660 1.09319 1.01281 0.91636 1.20779 0.95163 0.94760 0.95831 1.20728 1.02519 1.00470 0.92838 1.23677 1.06238 0.93730 0.98231 1.72778 1.06413 1.29922 0.95128 1.73198 1.17322 1.05454 1.18650 0.91973 0.92111 0.93068 0.89642 0.91822 0.95132 0.93046 0.92643 0.84536 0.90650 0.91001 0.91318 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.12 1.96 5.99 -4.04 -0.02 1.94 16 3 N -0.58 -12.42 2.57 -175.05 -0.45 -12.87 16 4 C 0.25 6.56 5.23 -5.19 -0.03 6.54 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 6 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.36 7.67 7.45 -154.78 -1.15 6.51 16 14 C -0.20 -3.43 9.07 -39.00 -0.35 -3.78 16 15 C -0.05 -0.81 5.92 -104.29 -0.62 -1.43 16 16 C -0.11 -1.05 10.07 36.01 0.36 -0.69 16 17 C -0.05 -0.81 11.03 -17.35 -0.19 -1.00 16 18 N -0.20 -4.28 11.49 30.57 0.35 -3.93 16 19 N -0.29 -6.99 10.27 31.23 0.32 -6.67 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 24 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 25 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.05 1.50 7.32 -51.93 -0.38 1.12 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.14 1.89 6.14 -52.49 -0.32 1.56 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -32.42 276.92 -6.29 -38.71 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.35 Total: -3.10 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.04 Total: -7.49 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.96 Total: -49.37 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.42 -6.29 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233445509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.569 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds