Wall clock time and date at job start Sun Mar 29 2020 22:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47084 * 2 1 4 4 C 1.46506 * 119.99592 * 270.00002 * 3 2 1 5 5 C 1.50700 * 109.46672 * 269.99709 * 4 3 2 6 6 H 1.08006 * 120.00389 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99783 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47414 * 60.00107 * 9 7 5 11 11 H 1.48500 * 109.46628 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47062 * 299.99712 * 9 7 5 13 13 C 1.39042 * 120.00474 * 89.99489 * 3 2 1 14 14 C 1.39486 * 120.15576 * 5.00332 * 13 3 2 15 15 C 1.38553 * 117.90290 * 180.25453 * 14 13 3 16 16 C 1.50704 * 120.98269 * 179.72189 * 15 14 13 17 17 C 1.38821 * 118.03864 * 359.46128 * 15 14 13 18 18 N 1.31791 * 120.01592 * 0.55211 * 17 15 14 19 19 N 1.28347 * 122.28037 * 359.71422 * 18 17 15 20 20 H 1.09003 * 109.46628 * 60.00706 * 1 2 3 21 21 H 1.09005 * 109.46699 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47142 * 300.00363 * 1 2 3 23 23 H 1.09000 * 109.47593 * 239.99523 * 2 1 3 24 24 H 1.09007 * 109.47089 * 119.99427 * 2 1 3 25 25 H 1.08998 * 109.47285 * 29.99311 * 4 3 2 26 26 H 1.08995 * 109.47109 * 149.99727 * 4 3 2 27 27 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.08002 * 121.04530 * 359.97424 * 14 13 3 29 29 H 1.08996 * 109.47124 * 89.99663 * 16 15 14 30 30 H 1.08992 * 109.47278 * 209.99699 * 16 15 14 31 31 H 1.09003 * 109.46559 * 329.99782 * 16 15 14 32 32 H 1.07998 * 119.99113 * 180.26337 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1254 -3.6182 9 14 5.9133 2.0953 -3.4175 10 1 6.1404 0.6386 -3.5946 11 1 6.1608 2.7954 -4.7035 12 1 6.8411 2.6189 -2.3829 13 6 2.2500 2.0368 1.2041 14 6 2.1191 1.3512 2.4117 15 6 2.3557 2.0513 3.5837 16 6 2.2280 1.3806 4.9273 17 6 2.7192 3.3873 3.4838 18 7 2.8196 3.9564 2.2993 19 7 2.5966 3.3155 1.2098 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.5818 1.6876 -2.0285 26 1 2.0955 3.1410 -1.1386 27 1 3.6753 3.5159 -4.4442 28 1 1.8376 0.3087 2.4327 29 1 3.1884 0.9504 5.2113 30 1 1.9243 2.1153 5.6728 31 1 1.4791 0.5907 4.8693 32 1 2.9152 3.9617 4.3770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233445509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:07 Heat of formation + Delta-G solvation = 35.988624 kcal Electronic energy + Delta-G solvation = -14889.784275 eV Core-core repulsion = 12464.002839 eV Total energy + Delta-G solvation = -2425.781436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.75380 -38.32493 -35.25773 -34.87039 -32.81068 -31.40995 -29.15798 -28.14950 -25.52189 -24.85589 -23.58495 -21.58222 -18.74981 -18.35841 -17.93015 -17.08604 -16.58469 -16.14060 -15.44365 -15.02568 -14.70239 -14.11110 -13.90594 -13.83469 -13.66980 -13.34518 -13.10587 -13.02616 -12.70115 -12.51012 -12.20866 -11.98782 -11.89076 -11.62010 -11.26506 -10.63417 -10.51517 -10.21263 -8.68845 -8.13195 -6.34864 0.11094 0.49754 1.34473 1.38825 1.46063 2.16009 2.39919 2.90482 3.08771 3.58225 3.84631 3.92050 3.95095 4.18786 4.20921 4.37017 4.51819 4.72280 4.83575 4.87359 4.90646 5.02161 5.11367 5.14703 5.22615 5.30798 5.35686 5.56579 5.67870 6.07307 6.31063 6.57944 6.77452 7.34194 8.20888 8.86136 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.008540 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.967163 B = 3278.090886 C = 3765.334008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.592 5.592 4 C 0.273 3.727 5 C -0.539 4.539 6 H 0.047 0.953 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.337 3.663 14 C -0.200 4.200 15 C -0.041 4.041 16 C -0.104 4.104 17 C -0.038 4.038 18 N -0.249 5.249 19 N -0.363 5.363 20 H 0.037 0.963 21 H 0.097 0.903 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.014 0.986 26 H 0.008 0.992 27 H 0.267 0.733 28 H 0.171 0.829 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 -8.752 15.457 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.009 4.009 3 N -0.303 5.303 4 C 0.151 3.849 5 C -0.578 4.578 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.095 3.905 14 C -0.233 4.233 15 C -0.052 4.052 16 C -0.160 4.160 17 C -0.210 4.210 18 N -0.088 5.088 19 N -0.215 5.215 20 H 0.056 0.944 21 H 0.116 0.884 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.032 0.968 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.188 0.812 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.862 -7.407 14.166 16.445 hybrid contribution 0.586 -0.799 -0.166 1.004 sum -3.276 -8.206 14.000 16.555 Atomic orbital electron populations 1.22144 0.94835 1.03371 1.01353 1.21664 0.94963 0.80677 1.03558 1.47002 1.66804 1.13688 1.02802 1.18697 0.94701 0.91891 0.79590 1.21668 0.97950 1.31837 1.06371 0.93432 1.25800 1.02104 0.94547 0.96437 1.70040 1.37694 1.34180 1.14788 0.85533 0.79361 0.78897 0.77389 1.18627 1.20188 1.20577 1.20441 0.90660 0.91070 0.88359 1.22021 1.08276 1.02677 0.90351 1.21399 0.92119 0.93893 0.97761 1.20877 1.04202 1.01293 0.89662 1.24456 1.03465 0.95176 0.97924 1.72638 1.08720 1.31177 0.96234 1.73019 1.20314 1.07497 1.20663 0.94388 0.88409 0.92787 0.90815 0.88667 0.96760 0.97371 0.92441 0.81200 0.88798 0.88720 0.89313 0.78827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.24 71.98 0.74 -3.51 16 2 C 0.11 3.68 5.99 86.38 0.52 4.20 16 3 N -0.59 -26.23 2.57 -707.73 -1.82 -28.05 16 4 C 0.27 15.14 5.23 85.63 0.45 15.59 16 5 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.60 5.46 84.66 0.46 1.06 16 8 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 9 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 C 0.34 14.52 7.45 133.11 0.99 15.51 16 14 C -0.20 -6.21 9.07 22.65 0.21 -6.00 16 15 C -0.04 -1.06 5.92 -19.65 -0.12 -1.18 16 16 C -0.10 -1.41 10.07 71.24 0.72 -0.69 16 17 C -0.04 -1.18 11.03 84.84 0.94 -0.25 16 18 N -0.25 -10.82 11.49 -57.20 -0.66 -11.48 16 19 N -0.36 -18.13 10.27 -55.10 -0.57 -18.70 16 20 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 24 H 0.10 2.43 6.03 -2.38 -0.01 2.41 16 25 H 0.01 0.82 8.07 -2.39 -0.02 0.80 16 26 H 0.01 0.52 7.32 -2.39 -0.02 0.50 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.17 3.97 6.14 -2.91 -0.02 3.95 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 0.94 8.11 -2.39 -0.02 0.92 16 31 H 0.09 0.94 8.11 -2.39 -0.02 0.92 16 32 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -76.29 276.92 5.50 -70.78 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.10 Total: 3.33 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.14 Total: -6.92 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -2.76 Total: -115.33 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.29 5.50 -70.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233445509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.773 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds