Wall clock time and date at job start Sun Mar 29 2020 22:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47229 * 2 1 4 4 H 1.09005 * 109.47036 * 185.17689 * 3 2 1 5 5 C 1.50696 * 109.47363 * 305.18117 * 3 2 1 6 6 H 1.08001 * 119.99889 * 119.99528 * 5 3 2 7 7 C 1.37882 * 120.00006 * 300.00119 * 5 3 2 8 8 N 1.31515 * 119.99808 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99872 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47179 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.47105 * 210.00365 * 9 7 5 12 12 H 1.48502 * 109.47201 * 329.99832 * 9 7 5 13 13 N 1.46896 * 109.46963 * 65.18299 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89931 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.38611 * 120.07583 * 94.72674 * 15 14 13 17 17 C 1.38878 * 117.96787 * 179.73980 * 16 15 14 18 18 C 1.38609 * 117.96803 * 0.52420 * 17 16 15 19 19 N 1.31922 * 119.84702 * 359.72983 * 18 17 16 20 20 N 1.28350 * 122.18751 * 0.02562 * 19 18 17 21 21 H 1.09003 * 109.46734 * 294.85059 * 1 2 3 22 22 H 1.08999 * 109.47071 * 174.85149 * 1 2 3 23 23 H 1.08998 * 109.47151 * 54.84694 * 1 2 3 24 24 H 1.08996 * 109.47426 * 120.00419 * 2 1 3 25 25 H 1.09000 * 109.47198 * 240.00421 * 2 1 3 26 26 H 0.97001 * 119.99496 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99920 * 321.94572 * 13 3 2 28 28 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 29 29 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 30 30 H 1.07997 * 121.01358 * 0.02562 * 16 15 14 31 31 H 1.08008 * 121.01454 * 180.23470 * 17 16 15 32 32 H 1.08007 * 120.07389 * 179.75527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4357 2.1891 -1.1612 6 1 0.8266 3.0630 -0.9832 7 6 1.6604 1.7563 -2.4510 8 7 1.1334 2.4082 -3.4644 9 14 2.7144 0.2452 -2.7589 10 1 1.8539 -0.9651 -2.7673 11 1 3.3967 0.3766 -4.0712 12 1 3.7304 0.1227 -1.6828 13 7 1.6552 2.0979 1.2571 14 6 2.6440 1.8364 2.3115 15 6 2.2844 2.6249 3.5443 16 6 1.5366 2.0359 4.5519 17 6 1.2349 2.8009 5.6711 18 6 1.6906 4.1094 5.7062 19 7 2.3924 4.5875 4.6966 20 7 2.6754 3.8791 3.6644 21 1 -0.3633 0.4319 0.9326 22 1 -0.3633 -1.0235 -0.0922 23 1 -0.3633 0.5917 -0.8402 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.2917 2.1039 -4.3718 27 1 0.7326 1.8102 1.5472 28 1 2.6490 0.7726 2.5491 29 1 3.6330 2.1358 1.9644 30 1 1.2029 1.0119 4.4713 31 1 0.6585 2.3902 6.4870 32 1 1.4721 4.7360 6.5584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233870450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:59 Heat of formation + Delta-G solvation = 37.457387 kcal Electronic energy + Delta-G solvation = -14738.279964 eV Core-core repulsion = 12312.562218 eV Total energy + Delta-G solvation = -2425.717746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.88277 -38.66263 -35.27530 -34.00377 -33.80106 -32.01872 -29.02637 -26.82860 -25.47361 -25.00733 -23.43108 -21.39178 -18.73581 -18.27099 -17.73612 -17.16379 -16.71366 -16.08188 -15.71442 -15.23697 -14.93651 -14.54893 -14.38669 -14.10835 -14.00875 -13.30405 -12.92417 -12.61865 -12.46132 -12.24153 -11.74836 -11.64759 -11.27280 -11.13568 -11.10701 -10.83385 -10.65341 -10.50911 -9.04832 -8.22810 -6.23117 -0.04057 0.03656 1.30839 1.37188 1.46157 2.35175 2.62023 3.08417 3.12010 3.52102 3.75904 3.83575 3.92359 4.14382 4.25178 4.32068 4.35212 4.46931 4.54722 4.75409 4.89885 4.91596 5.05892 5.17967 5.20333 5.30518 5.40225 5.61424 5.74421 6.00211 6.67562 6.72125 6.82196 7.39746 7.85968 8.95019 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046365 B = 0.006771 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.760704 B = 4134.183180 C = 4329.471389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.156 4.156 3 C 0.193 3.807 4 H 0.027 0.973 5 C -0.489 4.489 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.262 1.262 11 H -0.303 1.303 12 H -0.249 1.249 13 N -0.681 5.681 14 C 0.110 3.890 15 C 0.068 3.932 16 C -0.115 4.115 17 C -0.103 4.103 18 C 0.027 3.973 19 N -0.291 5.291 20 N -0.277 5.277 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.263 0.737 27 H 0.339 0.661 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.181 0.819 31 H 0.198 0.802 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 -7.572 19.936 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.195 4.195 3 C 0.083 3.917 4 H 0.045 0.955 5 C -0.527 4.527 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.595 5.595 9 Si 0.773 3.227 10 H -0.188 1.188 11 H -0.231 1.231 12 H -0.173 1.173 13 N -0.313 5.313 14 C -0.020 4.020 15 C -0.079 4.079 16 C -0.144 4.144 17 C -0.132 4.132 18 C -0.138 4.138 19 N -0.130 5.130 20 N -0.118 5.118 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.198 0.802 31 H 0.215 0.785 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.775 -5.632 18.923 19.759 hybrid contribution -0.570 -2.138 -0.155 2.218 sum 0.206 -7.770 18.769 20.315 Atomic orbital electron populations 1.21582 0.95024 1.00712 1.01834 1.22419 0.97973 0.98719 1.00383 1.19478 0.95128 0.89544 0.87513 0.95502 1.21100 1.30020 1.11358 0.90259 0.95245 1.25728 0.97010 1.00061 0.95731 1.70056 1.47406 1.42654 0.99371 0.85908 0.79820 0.80114 0.76866 1.18809 1.23140 1.17272 1.60321 1.04735 1.63670 1.02612 1.20772 0.96961 0.96576 0.87699 1.22958 0.95135 0.92811 0.96970 1.22710 0.95311 1.03461 0.92955 1.22922 0.97272 0.93832 0.99135 1.24985 0.93641 0.96324 0.98827 1.72965 1.11737 1.29960 0.98385 1.72905 1.17790 1.05637 1.15512 0.92023 0.92310 0.94206 0.90718 0.94312 0.92781 0.84113 0.90676 0.91124 0.80196 0.78523 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.40 71.98 0.68 -4.15 16 2 C -0.16 -5.90 5.22 30.59 0.16 -5.74 16 3 C 0.19 8.69 1.93 44.17 0.09 8.77 16 4 H 0.03 1.27 6.76 -2.38 -0.02 1.25 16 5 C -0.49 -27.95 7.83 25.60 0.20 -27.75 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.64 5.42 84.66 0.46 1.10 16 8 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 9 Si 0.95 44.60 24.32 68.60 1.67 46.27 16 10 H -0.26 -11.57 6.91 99.48 0.69 -10.88 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 12 H -0.25 -10.79 6.53 99.48 0.65 -10.14 16 13 N -0.68 -26.97 6.19 -499.47 -3.09 -30.07 16 14 C 0.11 3.50 5.84 85.56 0.50 4.00 16 15 C 0.07 2.01 6.42 42.63 0.27 2.28 16 16 C -0.12 -2.23 9.86 22.51 0.22 -2.01 16 17 C -0.10 -1.52 10.21 22.51 0.23 -1.29 16 18 C 0.03 0.55 11.31 84.77 0.96 1.50 16 19 N -0.29 -9.21 11.50 -57.26 -0.66 -9.87 16 20 N -0.28 -10.04 11.43 -47.63 -0.54 -10.58 16 21 H 0.06 1.90 6.63 -2.39 -0.02 1.89 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.04 1.76 6.85 -2.39 -0.02 1.75 16 24 H 0.07 2.24 7.50 -2.39 -0.02 2.22 16 25 H 0.04 1.57 3.42 -2.39 -0.01 1.56 16 26 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.34 12.21 6.69 -89.69 -0.60 11.61 16 28 H 0.08 1.84 7.45 -2.39 -0.02 1.82 16 29 H 0.07 2.49 7.93 -2.38 -0.02 2.47 16 30 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.20 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -76.07 263.33 1.89 -74.19 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.45 Total: 13.56 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.77 Total: -23.27 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.00 Total: -110.75 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -76.07 1.89 -74.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233870450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.644 kcal (2) G-P(sol) polarization free energy of solvation -76.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds