Wall clock time and date at job start Sun Mar 29 2020 22:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46732 * 2 1 4 4 H 1.08993 * 109.47365 * 304.24814 * 3 2 1 5 5 C 1.50701 * 109.46942 * 184.24803 * 3 2 1 6 6 H 1.08001 * 119.99801 * 240.00344 * 5 3 2 7 7 C 1.37876 * 120.00231 * 60.00424 * 5 3 2 8 8 N 1.31514 * 120.00062 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00052 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47408 * 89.99859 * 9 7 5 11 11 H 1.48503 * 109.47035 * 209.99749 * 9 7 5 12 12 H 1.48497 * 109.47128 * 329.99419 * 9 7 5 13 13 N 1.46903 * 109.46817 * 64.25132 * 3 2 1 14 14 C 1.46897 * 110.99810 * 205.86875 * 13 3 2 15 15 C 1.50696 * 109.47402 * 174.80116 * 14 13 3 16 16 C 1.38622 * 120.07414 * 95.30128 * 15 14 13 17 17 C 1.38880 * 117.96648 * 180.24044 * 16 15 14 18 18 C 1.38611 * 117.96830 * 359.47154 * 17 16 15 19 19 N 1.31938 * 119.84768 * 0.26951 * 18 17 16 20 20 N 1.28347 * 122.17996 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.47464 * 294.89580 * 1 2 3 22 22 H 1.09000 * 109.47693 * 54.90146 * 1 2 3 23 23 H 1.09008 * 109.46693 * 174.90083 * 1 2 3 24 24 H 1.08998 * 109.47264 * 240.00850 * 2 1 3 25 25 H 1.08992 * 109.47591 * 120.00018 * 2 1 3 26 26 H 0.96996 * 120.00042 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00223 * 81.91609 * 13 3 2 28 28 H 1.08999 * 109.47292 * 54.79882 * 14 13 3 29 29 H 1.09008 * 109.47450 * 294.80480 * 14 13 3 30 30 H 1.08001 * 121.01872 * 359.97438 * 16 15 14 31 31 H 1.07995 * 121.01273 * 179.73859 * 17 16 15 32 32 H 1.08006 * 120.07852 * 180.29495 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5432 1.4439 -0.1052 6 1 4.1388 1.8919 0.6764 7 6 4.1582 0.8733 -1.1994 8 7 3.4330 0.3274 -2.1510 9 14 6.0217 0.8744 -1.3294 10 1 6.5629 -0.3549 -0.6960 11 1 6.4180 0.9096 -2.7602 12 1 6.5656 2.0694 -0.6357 13 7 1.6357 2.1047 1.2475 14 6 1.5390 3.5590 1.0641 15 6 1.0010 4.1894 2.3228 16 6 1.8731 4.7061 3.2684 17 6 1.3301 5.2724 4.4144 18 6 -0.0504 5.2960 4.5365 19 7 -0.8029 4.7843 3.5811 20 7 -0.3009 4.2557 2.5248 21 1 -0.3634 0.4326 0.9322 22 1 -0.3634 0.5909 -0.8408 23 1 -0.3633 -1.0237 -0.0913 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8656 -0.0737 -2.9209 27 1 2.2685 1.8764 1.9995 28 1 0.8678 3.7766 0.2333 29 1 2.5275 3.9647 0.8484 30 1 2.9421 4.6656 3.1205 31 1 1.9641 5.6858 5.1848 32 1 -0.5091 5.7326 5.4114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234003528.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:03 Heat of formation + Delta-G solvation = 47.824945 kcal Electronic energy + Delta-G solvation = -14635.243900 eV Core-core repulsion = 12209.975725 eV Total energy + Delta-G solvation = -2425.268175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77212 -36.39362 -33.67627 -32.92987 -31.81624 -30.55969 -27.04746 -25.12099 -24.41068 -22.81813 -21.77372 -19.54442 -17.33941 -16.83394 -16.60950 -15.36820 -15.07112 -14.63132 -13.88073 -13.61736 -13.37972 -13.10594 -12.65445 -12.06742 -11.91356 -11.26341 -11.20602 -10.97556 -10.67446 -10.60871 -10.23068 -10.12995 -9.78125 -9.61305 -9.45573 -9.39608 -9.09923 -8.42783 -7.35845 -6.04567 -4.18402 0.94046 1.08308 3.23063 3.30819 3.31651 3.73117 4.23825 4.34646 4.62764 4.69881 4.80423 5.08707 5.20262 5.40921 5.52334 5.84991 5.92474 6.20861 6.34398 6.42529 6.46764 6.55689 6.76003 7.11792 7.22803 7.39552 7.55506 7.73540 8.01709 8.06280 8.25263 8.55811 8.92963 8.95003 9.49459 10.95764 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033733 B = 0.007165 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.858632 B = 3907.118125 C = 4560.765941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.115 3.885 15 C 0.092 3.908 16 C -0.116 4.116 17 C -0.123 4.123 18 C 0.022 3.978 19 N -0.248 5.248 20 N -0.226 5.226 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.024 0.976 24 H 0.091 0.909 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.327 0.673 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 7.770 9.902 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.016 4.016 15 C -0.053 4.053 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.142 4.142 19 N -0.089 5.089 20 N -0.069 5.069 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.109 0.891 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.697 7.232 9.027 12.143 hybrid contribution 3.603 0.554 0.515 3.681 sum -0.094 7.786 9.542 12.316 Atomic orbital electron populations 1.21693 0.98763 0.98302 1.00667 1.21490 0.92282 0.98903 1.01671 1.19203 0.92755 0.91331 0.85793 0.94618 1.21838 0.92556 1.38552 1.05965 0.92843 1.24928 0.98009 0.94892 0.95600 1.69876 1.34956 1.37673 1.09501 0.86644 0.85961 0.78362 0.77279 1.20623 1.21148 1.20122 1.60878 1.55474 1.04140 1.10294 1.20671 0.98968 0.90731 0.91276 1.23224 0.91236 0.93406 0.97436 1.22411 1.02279 0.96165 0.93696 1.22355 0.96510 0.98159 0.98225 1.24231 0.92260 0.97998 0.99737 1.73063 1.32808 1.05305 0.97698 1.73020 1.12296 1.09140 1.12461 0.93334 0.94306 0.95690 0.89076 0.95131 0.92760 0.85701 0.89636 0.93143 0.83444 0.83724 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.73 37.15 0.36 -2.55 16 2 C -0.10 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.24 1.98 -68.86 -0.14 5.10 16 4 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 5 C -0.55 -14.27 8.47 -34.44 -0.29 -14.56 16 6 H 0.05 1.35 7.73 -52.49 -0.41 0.95 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -14.05 5.72 -109.22 -0.62 -14.68 16 14 C 0.11 2.11 5.85 -4.98 -0.03 2.08 16 15 C 0.09 1.52 6.42 -82.41 -0.53 0.99 16 16 C -0.12 -1.50 9.85 -39.20 -0.39 -1.89 16 17 C -0.12 -1.32 10.21 -39.21 -0.40 -1.72 16 18 C 0.02 0.27 11.31 -17.37 -0.20 0.07 16 19 N -0.25 -4.04 11.50 30.55 0.35 -3.69 16 20 N -0.23 -4.12 11.43 33.59 0.38 -3.74 16 21 H 0.05 1.02 7.88 -51.93 -0.41 0.61 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 24 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.33 6.60 8.45 -39.29 -0.33 6.27 16 28 H 0.09 1.65 7.92 -51.93 -0.41 1.24 16 29 H 0.05 0.91 8.03 -51.92 -0.42 0.49 16 30 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 275.96 15.07 4.16 4.16 Total: -1.00 -29.21 275.96 -6.33 -35.54 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.36 Total: 4.14 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.85 Total: -13.40 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.74 Total: -45.92 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.21 -6.33 -35.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234003528.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.362 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds