Wall clock time and date at job start Sun Mar 29 2020 22:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46732 * 2 1 4 4 H 1.08993 * 109.47365 * 304.24814 * 3 2 1 5 5 C 1.50701 * 109.46942 * 184.24803 * 3 2 1 6 6 H 1.08001 * 119.99801 * 240.00344 * 5 3 2 7 7 C 1.37876 * 120.00231 * 60.00424 * 5 3 2 8 8 N 1.31514 * 120.00062 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00052 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47408 * 89.99859 * 9 7 5 11 11 H 1.48503 * 109.47035 * 209.99749 * 9 7 5 12 12 H 1.48497 * 109.47128 * 329.99419 * 9 7 5 13 13 N 1.46903 * 109.46817 * 64.25132 * 3 2 1 14 14 C 1.46897 * 110.99810 * 205.86875 * 13 3 2 15 15 C 1.50696 * 109.47402 * 174.80116 * 14 13 3 16 16 C 1.38622 * 120.07414 * 95.30128 * 15 14 13 17 17 C 1.38880 * 117.96648 * 180.24044 * 16 15 14 18 18 C 1.38611 * 117.96830 * 359.47154 * 17 16 15 19 19 N 1.31938 * 119.84768 * 0.26951 * 18 17 16 20 20 N 1.28347 * 122.17996 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.47464 * 294.89580 * 1 2 3 22 22 H 1.09000 * 109.47693 * 54.90146 * 1 2 3 23 23 H 1.09008 * 109.46693 * 174.90083 * 1 2 3 24 24 H 1.08998 * 109.47264 * 240.00850 * 2 1 3 25 25 H 1.08992 * 109.47591 * 120.00018 * 2 1 3 26 26 H 0.96996 * 120.00042 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00223 * 81.91609 * 13 3 2 28 28 H 1.08999 * 109.47292 * 54.79882 * 14 13 3 29 29 H 1.09008 * 109.47450 * 294.80480 * 14 13 3 30 30 H 1.08001 * 121.01872 * 359.97438 * 16 15 14 31 31 H 1.07995 * 121.01273 * 179.73859 * 17 16 15 32 32 H 1.08006 * 120.07852 * 180.29495 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5432 1.4439 -0.1052 6 1 4.1388 1.8919 0.6764 7 6 4.1582 0.8733 -1.1994 8 7 3.4330 0.3274 -2.1510 9 14 6.0217 0.8744 -1.3294 10 1 6.5629 -0.3549 -0.6960 11 1 6.4180 0.9096 -2.7602 12 1 6.5656 2.0694 -0.6357 13 7 1.6357 2.1047 1.2475 14 6 1.5390 3.5590 1.0641 15 6 1.0010 4.1894 2.3228 16 6 1.8731 4.7061 3.2684 17 6 1.3301 5.2724 4.4144 18 6 -0.0504 5.2960 4.5365 19 7 -0.8029 4.7843 3.5811 20 7 -0.3009 4.2557 2.5248 21 1 -0.3634 0.4326 0.9322 22 1 -0.3634 0.5909 -0.8408 23 1 -0.3633 -1.0237 -0.0913 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8656 -0.0737 -2.9209 27 1 2.2685 1.8764 1.9995 28 1 0.8678 3.7766 0.2333 29 1 2.5275 3.9647 0.8484 30 1 2.9421 4.6656 3.1205 31 1 1.9641 5.6858 5.1848 32 1 -0.5091 5.7326 5.4114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234003528.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:03 Heat of formation + Delta-G solvation = 27.806778 kcal Electronic energy + Delta-G solvation = -14636.111953 eV Core-core repulsion = 12209.975725 eV Total energy + Delta-G solvation = -2426.136228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86539 -38.14143 -35.21383 -33.97452 -33.61175 -32.15111 -28.78907 -26.71462 -25.45397 -24.55799 -23.15072 -21.45293 -18.85409 -18.22191 -17.73198 -16.87354 -16.54665 -16.12520 -15.37039 -15.32159 -14.75781 -14.37594 -14.08231 -13.73239 -13.52246 -13.08710 -13.06463 -12.77083 -12.50107 -12.10266 -11.87587 -11.53150 -11.39401 -11.11085 -11.04100 -10.77353 -10.52316 -10.46298 -9.10447 -8.04752 -6.27326 -0.04902 0.04304 1.41388 1.42914 1.51418 2.41541 2.64121 3.08874 3.17458 3.57114 3.78930 3.89119 3.99341 4.16675 4.33142 4.57767 4.65824 4.74606 4.81107 4.91398 4.92719 5.14952 5.23342 5.39433 5.40653 5.50614 5.61155 5.76232 6.07693 6.15184 6.33270 6.75340 6.98429 7.44417 7.85370 8.92927 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033733 B = 0.007165 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.858632 B = 3907.118125 C = 4560.765941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.560 4.560 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.675 5.675 14 C 0.122 3.878 15 C 0.073 3.927 16 C -0.120 4.120 17 C -0.101 4.101 18 C 0.029 3.971 19 N -0.286 5.286 20 N -0.272 5.272 21 H 0.050 0.950 22 H 0.030 0.970 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.332 0.668 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.169 0.831 31 H 0.196 0.804 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 8.879 12.295 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.020 0.980 5 C -0.599 4.599 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.305 5.305 14 C -0.009 4.009 15 C -0.073 4.073 16 C -0.149 4.149 17 C -0.129 4.129 18 C -0.136 4.136 19 N -0.126 5.126 20 N -0.113 5.113 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.186 0.814 31 H 0.213 0.787 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.523 8.351 11.433 14.381 hybrid contribution 3.200 0.291 -0.122 3.216 sum 0.677 8.643 11.311 14.251 Atomic orbital electron populations 1.21547 0.96811 0.99440 1.00365 1.21364 0.93998 0.98445 1.00177 1.18956 0.91989 0.91365 0.86159 0.98032 1.22152 0.93511 1.38173 1.06048 0.92339 1.25703 1.02331 0.94688 0.95386 1.70017 1.36638 1.38476 1.09987 0.85623 0.80731 0.78578 0.77068 1.20278 1.21264 1.19142 1.60739 1.55205 1.05763 1.08773 1.20504 0.98700 0.89361 0.92336 1.22899 0.91692 0.95104 0.97573 1.22659 1.02895 0.95717 0.93649 1.22893 0.96411 0.95728 0.97914 1.24972 0.93142 0.95964 0.99538 1.72953 1.34159 1.06999 0.98477 1.72887 1.13292 1.11006 1.14162 0.93128 0.95114 0.93679 0.91759 0.95229 0.92871 0.85166 0.91790 0.92859 0.81356 0.78687 0.77509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 9.73 71.98 0.70 -4.64 16 2 C -0.10 -4.95 5.45 30.59 0.17 -4.78 16 3 C 0.22 11.12 1.98 44.17 0.09 11.21 16 4 H 0.00 0.10 7.70 -2.39 -0.02 0.08 16 5 C -0.56 -29.26 8.47 25.60 0.22 -29.04 16 6 H 0.06 2.93 7.73 -2.91 -0.02 2.91 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -51.61 11.29 21.45 0.24 -51.37 16 9 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 N -0.68 -28.39 5.72 -499.46 -2.86 -31.24 16 14 C 0.12 4.60 5.85 85.56 0.50 5.10 16 15 C 0.07 2.40 6.42 42.64 0.27 2.67 16 16 C -0.12 -2.80 9.85 22.52 0.22 -2.58 16 17 C -0.10 -1.71 10.21 22.51 0.23 -1.48 16 18 C 0.03 0.59 11.31 84.77 0.96 1.55 16 19 N -0.29 -9.02 11.50 -57.25 -0.66 -9.68 16 20 N -0.27 -9.95 11.43 -47.63 -0.54 -10.49 16 21 H 0.05 2.13 7.88 -2.38 -0.02 2.11 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 3.51 5.97 -2.39 -0.01 3.49 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.33 13.33 8.45 -89.70 -0.76 12.57 16 28 H 0.06 2.63 7.92 -2.39 -0.02 2.61 16 29 H 0.05 1.94 8.03 -2.38 -0.02 1.92 16 30 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -65.17 275.96 2.36 -62.81 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.35 Total: 16.48 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 3.80 Total: -20.52 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -3.82 Total: -102.79 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -65.17 2.36 -62.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234003528.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.615 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds