Wall clock time and date at job start Sun Mar 29 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46898 * 2 1 4 4 C 1.35934 * 116.99879 * 180.02562 * 3 2 1 5 5 C 1.38823 * 119.96969 * 359.97438 * 4 3 2 6 6 C 1.37972 * 120.03553 * 180.30368 * 5 4 3 7 7 C 1.39109 * 119.96910 * 359.44655 * 6 5 4 8 8 N 1.39400 * 120.03938 * 180.30347 * 7 6 5 9 9 C 1.36835 * 119.99805 * 0.24975 * 8 7 6 10 10 H 1.08001 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.38755 * 120.00024 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46909 * 90.00135 * 13 11 9 15 15 H 1.48501 * 109.47151 * 210.00139 * 13 11 9 16 16 H 1.48494 * 109.47268 * 329.99871 * 13 11 9 17 17 C 1.39061 * 119.92488 * 0.55147 * 7 6 5 18 18 C 1.38019 * 119.97099 * 359.72595 * 17 7 6 19 19 C 1.50699 * 119.98871 * 179.97438 * 18 17 7 20 20 H 1.08995 * 109.47274 * 300.00054 * 1 2 3 21 21 H 1.08997 * 109.47286 * 60.00411 * 1 2 3 22 22 H 1.09008 * 109.46643 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47274 * 239.99946 * 2 1 3 24 24 H 1.09005 * 109.47129 * 119.99311 * 2 1 3 25 25 H 1.08002 * 119.97771 * 0.02562 * 5 4 3 26 26 H 1.07998 * 120.01932 * 179.72359 * 6 5 4 27 27 H 0.97000 * 120.00207 * 180.24822 * 8 7 6 28 28 H 0.97003 * 120.00245 * 180.02562 * 12 11 9 29 29 H 1.07999 * 120.01546 * 179.74981 * 17 7 6 30 30 H 1.08998 * 109.47048 * 270.02779 * 19 18 17 31 31 H 1.09011 * 109.46412 * 30.02604 * 19 18 17 32 32 H 1.09001 * 109.47275 * 150.02161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3539 1.5255 -0.0005 5 6 4.1990 0.4241 -0.0005 6 6 5.5670 0.6033 0.0053 7 6 6.0995 1.8884 -0.0006 8 7 7.4815 2.0712 -0.0011 9 6 8.3151 0.9860 -0.0011 10 1 7.9023 -0.0120 -0.0003 11 6 9.6907 1.1679 -0.0011 12 7 10.1937 2.3842 -0.0017 13 14 10.8287 -0.3135 -0.0004 14 1 11.1303 -0.7066 -1.4003 15 1 12.0917 0.0329 0.6996 16 1 10.1687 -1.4443 0.7001 17 6 5.2517 2.9907 -0.0006 18 6 3.8836 2.8082 -0.0006 19 6 2.9644 4.0024 -0.0001 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8901 25 1 3.7853 -0.5735 -0.0005 26 1 6.2242 -0.2537 0.0098 27 1 7.8522 2.9675 -0.0016 28 1 11.1554 2.5113 -0.0021 29 1 5.6635 3.9891 -0.0011 30 1 2.7433 4.2902 1.0277 31 1 3.4480 4.8333 -0.5141 32 1 2.0374 3.7476 -0.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258907608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:55 Heat of formation + Delta-G solvation = -22.980309 kcal Electronic energy + Delta-G solvation = -14488.165333 eV Core-core repulsion = 12027.534061 eV Total energy + Delta-G solvation = -2460.631272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.30251 -37.25948 -34.75086 -32.23286 -31.23553 -31.00525 -27.79758 -25.73324 -24.37158 -23.48222 -20.81739 -20.09728 -17.71261 -17.17875 -16.03088 -15.58787 -14.99713 -14.39568 -13.94141 -13.41033 -13.30943 -12.99634 -12.40279 -12.31633 -12.19625 -11.91190 -11.83551 -11.60720 -11.18690 -11.11139 -10.93700 -10.59135 -10.53901 -10.28493 -9.64951 -9.57145 -8.45734 -7.88363 -6.48886 -6.39255 -3.65847 2.31710 2.61452 3.18512 3.19407 3.22319 3.93105 4.10001 4.65852 5.13267 5.23864 5.25276 5.31614 5.46383 5.60619 5.69435 5.74510 5.95105 6.04504 6.07391 6.18385 6.25876 6.39753 6.43213 6.65476 7.03005 7.16730 7.29066 7.45243 7.52483 7.67408 7.88872 8.36592 8.83133 9.43924 9.63590 10.68626 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044153 B = 0.006252 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.009428 B = 4477.534942 C = 5085.794176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.326 6.326 4 C -0.005 4.005 5 C -0.136 4.136 6 C -0.197 4.197 7 C 0.194 3.806 8 N -0.570 5.570 9 C -0.297 4.297 10 H 0.099 0.901 11 C 0.016 3.984 12 N -0.898 5.898 13 Si 0.929 3.071 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.270 1.270 17 C -0.211 4.211 18 C -0.054 4.054 19 C -0.098 4.098 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.398 0.602 28 H 0.272 0.728 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -2.531 0.013 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.241 6.241 4 C -0.052 4.052 5 C -0.156 4.156 6 C -0.221 4.221 7 C 0.075 3.925 8 N -0.175 5.175 9 C -0.427 4.427 10 H 0.117 0.883 11 C -0.186 4.186 12 N -0.537 5.537 13 Si 0.756 3.244 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.195 1.195 17 C -0.236 4.236 18 C -0.055 4.055 19 C -0.155 4.155 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.233 0.767 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.675 -2.463 0.019 11.932 hybrid contribution 1.056 -0.655 0.000 1.243 sum -10.619 -3.118 0.019 11.067 Atomic orbital electron populations 1.21738 0.93944 1.01982 1.02946 1.22471 0.94677 0.83933 1.00514 1.85894 1.20197 1.26828 1.91227 1.18098 0.81087 0.93389 1.12590 1.20736 0.93833 0.96452 1.04544 1.20249 0.93679 0.95911 1.12272 1.17808 0.84545 0.93246 0.96912 1.40896 1.00589 1.08909 1.67145 1.19660 0.87514 0.88255 1.47246 0.88339 1.25227 0.97476 0.97898 0.97984 1.69695 1.13603 1.20458 1.49909 0.85861 0.79441 0.80649 0.78406 1.20388 1.20807 1.19510 1.19967 0.91508 0.96884 1.15230 1.18646 0.93037 0.91707 1.02126 1.20527 0.98418 0.95323 1.01232 0.91962 0.91965 0.91203 0.93125 0.93114 0.87475 0.86527 0.76695 0.91771 0.87153 0.92312 0.92559 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.82 5.46 37.16 0.20 1.02 16 3 O -0.33 -5.72 9.17 -19.53 -0.18 -5.89 16 4 C -0.01 -0.10 6.66 -39.16 -0.26 -0.37 16 5 C -0.14 -2.69 9.03 -39.46 -0.36 -3.04 16 6 C -0.20 -4.35 9.30 -39.36 -0.37 -4.71 16 7 C 0.19 4.52 6.62 -83.79 -0.55 3.96 16 8 N -0.57 -14.46 5.44 -9.59 -0.05 -14.52 16 9 C -0.30 -7.81 9.55 -15.13 -0.14 -7.96 16 10 H 0.10 2.50 5.68 -52.49 -0.30 2.20 16 11 C 0.02 0.42 5.50 -17.45 -0.10 0.33 16 12 N -0.90 -24.57 13.05 55.49 0.72 -23.85 16 13 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 C -0.21 -4.46 9.55 -39.36 -0.38 -4.84 16 18 C -0.05 -1.06 5.89 -104.50 -0.62 -1.67 16 19 C -0.10 -1.58 9.79 36.00 0.35 -1.22 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 24 H 0.05 0.67 7.66 -51.93 -0.40 0.28 16 25 H 0.11 1.83 6.29 -52.49 -0.33 1.50 16 26 H 0.12 2.57 5.95 -52.49 -0.31 2.26 16 27 H 0.40 10.24 7.90 -40.82 -0.32 9.92 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.82 8.09 -51.92 -0.42 0.40 16 32 H 0.06 0.96 7.52 -51.93 -0.39 0.57 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -28.01 271.84 -6.38 -34.39 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.12 Total: 10.18 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.83 Total: -19.67 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.67 Total: -38.36 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.18 Total: -5.89 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.01 -6.38 -34.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258907608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.413 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds