Wall clock time and date at job start Sun Mar 29 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46898 * 2 1 4 4 C 1.35934 * 116.99879 * 180.02562 * 3 2 1 5 5 C 1.38823 * 119.96969 * 359.97438 * 4 3 2 6 6 C 1.37972 * 120.03553 * 180.30368 * 5 4 3 7 7 C 1.39109 * 119.96910 * 359.44655 * 6 5 4 8 8 N 1.39400 * 120.03938 * 180.30347 * 7 6 5 9 9 C 1.36835 * 119.99805 * 0.24975 * 8 7 6 10 10 H 1.08001 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.38755 * 120.00024 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46909 * 90.00135 * 13 11 9 15 15 H 1.48501 * 109.47151 * 210.00139 * 13 11 9 16 16 H 1.48494 * 109.47268 * 329.99871 * 13 11 9 17 17 C 1.39061 * 119.92488 * 0.55147 * 7 6 5 18 18 C 1.38019 * 119.97099 * 359.72595 * 17 7 6 19 19 C 1.50699 * 119.98871 * 179.97438 * 18 17 7 20 20 H 1.08995 * 109.47274 * 300.00054 * 1 2 3 21 21 H 1.08997 * 109.47286 * 60.00411 * 1 2 3 22 22 H 1.09008 * 109.46643 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47274 * 239.99946 * 2 1 3 24 24 H 1.09005 * 109.47129 * 119.99311 * 2 1 3 25 25 H 1.08002 * 119.97771 * 0.02562 * 5 4 3 26 26 H 1.07998 * 120.01932 * 179.72359 * 6 5 4 27 27 H 0.97000 * 120.00207 * 180.24822 * 8 7 6 28 28 H 0.97003 * 120.00245 * 180.02562 * 12 11 9 29 29 H 1.07999 * 120.01546 * 179.74981 * 17 7 6 30 30 H 1.08998 * 109.47048 * 270.02779 * 19 18 17 31 31 H 1.09011 * 109.46412 * 30.02604 * 19 18 17 32 32 H 1.09001 * 109.47275 * 150.02161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3539 1.5255 -0.0005 5 6 4.1990 0.4241 -0.0005 6 6 5.5670 0.6033 0.0053 7 6 6.0995 1.8884 -0.0006 8 7 7.4815 2.0712 -0.0011 9 6 8.3151 0.9860 -0.0011 10 1 7.9023 -0.0120 -0.0003 11 6 9.6907 1.1679 -0.0011 12 7 10.1937 2.3842 -0.0017 13 14 10.8287 -0.3135 -0.0004 14 1 11.1303 -0.7066 -1.4003 15 1 12.0917 0.0329 0.6996 16 1 10.1687 -1.4443 0.7001 17 6 5.2517 2.9907 -0.0006 18 6 3.8836 2.8082 -0.0006 19 6 2.9644 4.0024 -0.0001 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8901 25 1 3.7853 -0.5735 -0.0005 26 1 6.2242 -0.2537 0.0098 27 1 7.8522 2.9675 -0.0016 28 1 11.1554 2.5113 -0.0021 29 1 5.6635 3.9891 -0.0011 30 1 2.7433 4.2902 1.0277 31 1 3.4480 4.8333 -0.5141 32 1 2.0374 3.7476 -0.5136 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258907608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:55 Heat of formation + Delta-G solvation = -38.908633 kcal Electronic energy + Delta-G solvation = -14488.856037 eV Core-core repulsion = 12027.534061 eV Total energy + Delta-G solvation = -2461.321976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85237 -38.83658 -36.44016 -33.91377 -32.86595 -32.17034 -29.46861 -27.25089 -26.24163 -24.69919 -22.25635 -21.75854 -19.51884 -18.68597 -17.75584 -16.79451 -16.67360 -16.11312 -15.58567 -14.98393 -14.66621 -14.42812 -13.84012 -13.59285 -13.51322 -13.42825 -13.30762 -13.08326 -12.77432 -12.54659 -12.40917 -12.21390 -12.03037 -11.84857 -11.26828 -11.21178 -10.24750 -9.51086 -8.40631 -8.13888 -5.63489 0.65447 0.94551 1.41803 1.48654 1.54008 2.31154 2.63290 2.90464 3.38699 3.51776 4.08281 4.12890 4.17549 4.33542 4.48822 4.59109 4.62354 4.80877 4.86493 4.93855 5.01892 5.04734 5.09595 5.29388 5.33013 5.44912 5.57757 5.71571 5.85196 5.93312 6.16271 6.85931 6.89068 7.59628 7.73002 8.78752 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044153 B = 0.006252 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.009428 B = 4477.534942 C = 5085.794176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.331 6.331 4 C 0.008 3.992 5 C -0.138 4.138 6 C -0.211 4.211 7 C 0.172 3.828 8 N -0.597 5.597 9 C -0.311 4.311 10 H 0.100 0.900 11 C -0.037 4.037 12 N -0.938 5.938 13 Si 0.995 3.005 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.262 1.262 17 C -0.213 4.213 18 C -0.064 4.064 19 C -0.094 4.094 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.390 0.610 28 H 0.271 0.729 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -3.491 0.033 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 O -0.247 6.247 4 C -0.038 4.038 5 C -0.157 4.157 6 C -0.236 4.236 7 C 0.058 3.942 8 N -0.206 5.206 9 C -0.441 4.441 10 H 0.118 0.882 11 C -0.234 4.234 12 N -0.579 5.579 13 Si 0.820 3.180 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.186 1.186 17 C -0.237 4.237 18 C -0.066 4.066 19 C -0.151 4.151 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.153 0.847 26 H 0.129 0.871 27 H 0.223 0.777 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.056 -3.446 0.038 14.472 hybrid contribution 1.378 -0.361 -0.007 1.425 sum -12.677 -3.807 0.032 13.237 Atomic orbital electron populations 1.21754 0.91277 1.03848 1.03101 1.22867 0.96842 0.82061 1.01081 1.85919 1.18482 1.29549 1.90709 1.18344 0.82354 0.93358 1.09780 1.20999 0.92833 0.98155 1.03699 1.20381 0.94828 0.95371 1.13004 1.18226 0.84271 0.94522 0.97219 1.40850 1.01201 1.08167 1.70387 1.19928 0.88202 0.88691 1.47308 0.88215 1.26082 0.98677 1.00548 0.98069 1.69811 1.13617 1.22292 1.52221 0.84861 0.77270 0.77525 0.78386 1.20014 1.20745 1.18613 1.20212 0.92181 0.96860 1.14495 1.19108 0.92997 0.93440 1.01011 1.20566 0.97917 0.94151 1.02452 0.91823 0.91814 0.88507 0.92517 0.92514 0.84651 0.87135 0.77685 0.91970 0.86276 0.90924 0.91146 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 1.12 5.46 71.98 0.39 1.51 16 3 O -0.33 -10.57 9.17 -92.81 -0.85 -11.42 16 4 C 0.01 0.31 6.66 22.54 0.15 0.46 16 5 C -0.14 -5.19 9.03 22.35 0.20 -4.99 16 6 C -0.21 -9.32 9.30 22.42 0.21 -9.11 16 7 C 0.17 8.14 6.62 38.34 0.25 8.39 16 8 N -0.60 -31.39 5.44 -184.24 -1.00 -32.39 16 9 C -0.31 -16.88 9.55 84.04 0.80 -16.08 16 10 H 0.10 5.19 5.68 -2.91 -0.02 5.17 16 11 C -0.04 -1.95 5.50 84.85 0.47 -1.49 16 12 N -0.94 -53.11 13.05 21.64 0.28 -52.83 16 13 Si 1.00 42.36 29.55 68.60 2.03 44.38 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 C -0.21 -8.92 9.55 22.42 0.21 -8.71 16 18 C -0.06 -2.40 5.89 -19.79 -0.12 -2.52 16 19 C -0.09 -2.76 9.79 71.24 0.70 -2.06 16 20 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 24 H 0.06 1.31 7.66 -2.38 -0.02 1.29 16 25 H 0.14 4.25 6.29 -2.91 -0.02 4.23 16 26 H 0.11 4.94 5.95 -2.91 -0.02 4.92 16 27 H 0.39 21.03 7.90 -92.71 -0.73 20.30 16 28 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16 29 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.86 8.09 -2.38 -0.02 1.84 16 32 H 0.07 1.95 7.52 -2.39 -0.02 1.93 16 Total: -1.00 -60.53 271.84 4.86 -55.67 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.39 Total: 32.89 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 4.01 Total: -36.31 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -0.72 Total: -85.22 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.85 Total: -11.42 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -60.53 4.86 -55.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258907608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.765 kcal (2) G-P(sol) polarization free energy of solvation -60.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds