Wall clock time and date at job start Sun Mar 29 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46941 * 2 1 4 4 C 1.53002 * 109.47216 * 240.00346 * 2 1 3 5 5 C 1.50698 * 109.47185 * 120.00101 * 2 1 3 6 6 C 1.38811 * 119.98625 * 75.00202 * 5 2 1 7 7 C 1.38571 * 118.05005 * 179.97438 * 6 5 2 8 8 C 1.39571 * 117.90031 * 0.02562 * 7 6 5 9 9 N 1.38878 * 120.16425 * 180.02562 * 8 7 6 10 10 C 1.36907 * 119.99827 * 359.72123 * 9 8 7 11 11 H 1.08001 * 120.00247 * 0.27609 * 10 9 8 12 12 C 1.38820 * 120.00290 * 180.27661 * 10 9 8 13 13 N 1.31564 * 119.99532 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00274 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47012 * 119.99870 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00054 * 14 12 10 18 18 N 1.32577 * 119.67198 * 0.27666 * 8 7 6 19 19 N 1.28347 * 122.06005 * 359.41936 * 18 8 7 20 20 H 1.08994 * 109.47292 * 299.99846 * 1 2 3 21 21 H 1.09006 * 109.47226 * 60.00163 * 1 2 3 22 22 H 1.09000 * 109.46765 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47047 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.46813 * 299.99895 * 3 2 1 25 25 H 1.08994 * 109.47002 * 59.99976 * 3 2 1 26 26 H 1.09000 * 109.47039 * 299.99569 * 4 2 1 27 27 H 1.09001 * 109.47104 * 59.99980 * 4 2 1 28 28 H 1.08995 * 109.46986 * 180.02562 * 4 2 1 29 29 H 1.08007 * 120.97605 * 359.95759 * 6 5 2 30 30 H 1.08003 * 121.04877 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00386 * 180.02562 * 9 8 7 32 32 H 0.97004 * 120.00290 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9703 -2.0951 1.3060 7 6 2.4438 -2.7068 2.4557 8 6 2.9537 -1.8910 3.4669 9 7 3.4411 -2.4546 4.6389 10 6 3.4171 -3.8131 4.8068 11 1 3.0232 -4.4469 4.0260 12 6 3.8991 -4.3761 5.9806 13 7 4.3785 -3.6041 6.9319 14 14 3.8670 -6.2297 6.2093 15 1 3.2839 -6.8675 5.0017 16 1 5.2513 -6.7275 6.4118 17 1 3.0408 -6.5678 7.3961 18 7 2.9657 -0.5752 3.3052 19 7 2.5302 -0.0163 2.2350 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6768 -1.7489 -1.2493 27 1 1.6767 -0.2073 -2.1393 28 1 3.1300 -0.7216 -1.2490 29 1 1.5645 -2.6785 0.4927 30 1 2.4192 -3.7809 2.5657 31 1 3.7946 -1.8854 5.3403 32 1 4.7157 -3.9974 7.7520 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259150193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:32 Heat of formation + Delta-G solvation = 40.257360 kcal Electronic energy + Delta-G solvation = -14701.075811 eV Core-core repulsion = 12275.479482 eV Total energy + Delta-G solvation = -2425.596330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91307 -36.84849 -35.28071 -32.28899 -31.52225 -28.89445 -27.05052 -26.93856 -25.21705 -23.19136 -22.29523 -19.32206 -17.89731 -16.95790 -16.04808 -15.21902 -14.61808 -14.28004 -13.80631 -13.58484 -13.38682 -13.22199 -12.47701 -12.05592 -11.91502 -11.77500 -11.53650 -11.37781 -11.21999 -10.87027 -10.61810 -10.52576 -10.49150 -10.43084 -9.78633 -9.14124 -9.03945 -8.37557 -7.31079 -6.75779 -3.98457 2.01334 2.26805 3.04904 3.06206 3.10456 3.86273 4.53082 4.69074 5.05102 5.05666 5.16370 5.39479 5.53122 5.66145 5.78116 5.84313 5.98489 6.02264 6.12300 6.13715 6.20554 6.21929 6.32151 6.42813 6.62936 6.72430 6.82157 7.06272 7.16434 7.30626 7.60867 8.53594 9.06229 9.26332 10.14648 10.40269 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057157 B = 0.006230 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.757350 B = 4493.446602 C = 4792.140607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.055 4.055 6 C -0.076 4.076 7 C -0.197 4.197 8 C 0.293 3.707 9 N -0.518 5.518 10 C -0.308 4.308 11 H 0.105 0.895 12 C 0.027 3.973 13 N -0.877 5.877 14 Si 0.938 3.062 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.277 1.277 18 N -0.352 5.352 19 N -0.190 5.190 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.407 0.593 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 1.138 -10.764 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.004 3.996 3 C -0.184 4.184 4 C -0.195 4.195 5 C -0.207 4.207 6 C -0.103 4.103 7 C -0.232 4.232 8 C 0.046 3.954 9 N -0.125 5.125 10 C -0.439 4.439 11 H 0.123 0.877 12 C -0.179 4.179 13 N -0.512 5.512 14 Si 0.764 3.236 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.212 5.212 19 N -0.035 5.035 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.244 0.756 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.206 2.233 -9.714 10.818 hybrid contribution -0.158 -2.267 -0.002 2.273 sum -4.364 -0.035 -9.715 10.651 Atomic orbital electron populations 1.21858 0.94610 1.01466 1.01312 1.19007 0.94598 0.95110 0.90889 1.21657 1.01108 0.94662 1.00950 1.21903 1.01177 1.00026 0.96441 1.21606 1.09297 0.91638 0.98191 1.21632 0.96839 0.94916 0.96950 1.21534 1.06170 1.00843 0.94622 1.19919 0.95391 0.91083 0.89000 1.40717 1.52133 1.07037 1.12583 1.19801 1.39740 0.81343 1.03021 0.87720 1.25395 0.96190 1.01296 0.95012 1.69706 1.38166 1.36421 1.06945 0.85674 0.78364 0.80757 0.78841 1.19017 1.20250 1.20244 1.72817 1.24282 1.07845 1.16225 1.72301 1.03487 1.31986 0.95722 0.92658 0.92859 0.92953 0.92792 0.93710 0.91837 0.92728 0.92745 0.92707 0.85919 0.84922 0.75647 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.41 37.16 0.31 -1.44 16 2 C 0.01 0.09 0.88 -155.66 -0.14 -0.05 16 3 C -0.13 -1.81 7.82 37.16 0.29 -1.52 16 4 C -0.14 -1.72 8.09 37.16 0.30 -1.42 16 5 C -0.05 -1.04 5.63 -82.37 -0.46 -1.51 16 6 C -0.08 -1.40 9.20 -39.25 -0.36 -1.76 16 7 C -0.20 -4.19 9.42 -38.96 -0.37 -4.56 16 8 C 0.29 7.10 7.71 -154.83 -1.19 5.90 16 9 N -0.52 -13.17 5.44 -11.04 -0.06 -13.23 16 10 C -0.31 -7.74 9.56 -15.07 -0.14 -7.89 16 11 H 0.11 2.47 5.71 -52.49 -0.30 2.17 16 12 C 0.03 0.67 5.50 -17.45 -0.10 0.58 16 13 N -0.88 -23.00 13.05 55.49 0.72 -22.27 16 14 Si 0.94 19.02 29.55 -169.99 -5.02 13.99 16 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 N -0.35 -8.62 11.54 31.23 0.36 -8.26 16 19 N -0.19 -4.23 10.20 33.62 0.34 -3.89 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.98 7.87 -51.93 -0.41 0.57 16 26 H 0.05 0.64 6.76 -51.93 -0.35 0.29 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 1.84 6.81 -52.48 -0.36 1.49 16 30 H 0.13 2.67 6.05 -52.48 -0.32 2.35 16 31 H 0.41 10.77 8.02 -40.82 -0.33 10.45 16 32 H 0.28 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 269.80 15.07 4.07 4.07 Total: -1.00 -27.38 269.80 -5.60 -32.99 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.15 Total: 10.28 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.86 Total: -13.67 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 1.37 Total: -47.65 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.38 -5.60 -32.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259150193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.244 kcal (2) G-P(sol) polarization free energy of solvation -27.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds