Wall clock time and date at job start Sun Mar 29 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46941 * 2 1 4 4 C 1.53002 * 109.47216 * 240.00346 * 2 1 3 5 5 C 1.50698 * 109.47185 * 120.00101 * 2 1 3 6 6 C 1.38811 * 119.98625 * 75.00202 * 5 2 1 7 7 C 1.38571 * 118.05005 * 179.97438 * 6 5 2 8 8 C 1.39571 * 117.90031 * 0.02562 * 7 6 5 9 9 N 1.38878 * 120.16425 * 180.02562 * 8 7 6 10 10 C 1.36907 * 119.99827 * 359.72123 * 9 8 7 11 11 H 1.08001 * 120.00247 * 0.27609 * 10 9 8 12 12 C 1.38820 * 120.00290 * 180.27661 * 10 9 8 13 13 N 1.31564 * 119.99532 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00274 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47012 * 119.99870 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00054 * 14 12 10 18 18 N 1.32577 * 119.67198 * 0.27666 * 8 7 6 19 19 N 1.28347 * 122.06005 * 359.41936 * 18 8 7 20 20 H 1.08994 * 109.47292 * 299.99846 * 1 2 3 21 21 H 1.09006 * 109.47226 * 60.00163 * 1 2 3 22 22 H 1.09000 * 109.46765 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47047 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.46813 * 299.99895 * 3 2 1 25 25 H 1.08994 * 109.47002 * 59.99976 * 3 2 1 26 26 H 1.09000 * 109.47039 * 299.99569 * 4 2 1 27 27 H 1.09001 * 109.47104 * 59.99980 * 4 2 1 28 28 H 1.08995 * 109.46986 * 180.02562 * 4 2 1 29 29 H 1.08007 * 120.97605 * 359.95759 * 6 5 2 30 30 H 1.08003 * 121.04877 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00386 * 180.02562 * 9 8 7 32 32 H 0.97004 * 120.00290 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9703 -2.0951 1.3060 7 6 2.4438 -2.7068 2.4557 8 6 2.9537 -1.8910 3.4669 9 7 3.4411 -2.4546 4.6389 10 6 3.4171 -3.8131 4.8068 11 1 3.0232 -4.4469 4.0260 12 6 3.8991 -4.3761 5.9806 13 7 4.3785 -3.6041 6.9319 14 14 3.8670 -6.2297 6.2093 15 1 3.2839 -6.8675 5.0017 16 1 5.2513 -6.7275 6.4118 17 1 3.0408 -6.5678 7.3961 18 7 2.9657 -0.5752 3.3052 19 7 2.5302 -0.0163 2.2350 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6768 -1.7489 -1.2493 27 1 1.6767 -0.2073 -2.1393 28 1 3.1300 -0.7216 -1.2490 29 1 1.5645 -2.6785 0.4927 30 1 2.4192 -3.7809 2.5657 31 1 3.7946 -1.8854 5.3403 32 1 4.7157 -3.9974 7.7520 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259150193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:32 Heat of formation + Delta-G solvation = 23.962800 kcal Electronic energy + Delta-G solvation = -14701.782397 eV Core-core repulsion = 12275.479482 eV Total energy + Delta-G solvation = -2426.302915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.59541 -38.31518 -36.89766 -34.08143 -33.16627 -30.61246 -28.15937 -27.99441 -27.00590 -24.85776 -23.95120 -20.72934 -19.62131 -18.68686 -17.76434 -16.62694 -16.24510 -15.84104 -15.47567 -14.93855 -14.72192 -14.66333 -13.93591 -13.50777 -13.34309 -13.01353 -12.93844 -12.71080 -12.45521 -12.39579 -12.23451 -12.06189 -11.73520 -11.68904 -11.29039 -10.89539 -10.70275 -10.06999 -9.13196 -8.56960 -5.89588 0.32612 0.60774 1.41966 1.47751 1.56741 2.19607 2.79704 2.95677 3.27522 3.65286 3.94001 4.05245 4.24431 4.28613 4.35489 4.46795 4.71389 4.89900 4.90570 4.98346 5.02060 5.11609 5.13821 5.24049 5.24708 5.35274 5.42900 5.56924 5.62280 5.70846 5.87292 6.67331 7.25589 7.38536 8.40259 8.62017 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057157 B = 0.006230 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.757350 B = 4493.446602 C = 4792.140607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.000 4.000 3 C -0.125 4.125 4 C -0.135 4.135 5 C -0.036 4.036 6 C -0.063 4.063 7 C -0.205 4.205 8 C 0.283 3.717 9 N -0.546 5.546 10 C -0.326 4.326 11 H 0.117 0.883 12 C -0.024 4.024 13 N -0.924 5.924 14 Si 1.009 2.991 15 H -0.250 1.250 16 H -0.277 1.277 17 H -0.277 1.277 18 N -0.390 5.390 19 N -0.222 5.222 20 H 0.036 0.964 21 H 0.084 0.916 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.171 0.829 30 H 0.145 0.855 31 H 0.394 0.606 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 0.117 -14.030 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.002 4.002 3 C -0.183 4.183 4 C -0.192 4.192 5 C -0.190 4.190 6 C -0.091 4.091 7 C -0.239 4.239 8 C 0.037 3.963 9 N -0.155 5.155 10 C -0.456 4.456 11 H 0.134 0.866 12 C -0.225 4.225 13 N -0.562 5.562 14 Si 0.831 3.169 15 H -0.174 1.174 16 H -0.203 1.203 17 H -0.203 1.203 18 N -0.248 5.248 19 N -0.063 5.063 20 H 0.056 0.944 21 H 0.103 0.897 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.227 0.773 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.789 1.261 -13.032 14.315 hybrid contribution 0.208 -1.735 0.715 1.888 sum -5.581 -0.474 -12.317 13.531 Atomic orbital electron populations 1.21841 0.92660 1.02366 1.02072 1.19283 0.96047 0.95034 0.89790 1.21652 1.00158 0.94799 1.01668 1.21898 1.00556 1.00851 0.95940 1.22579 1.05492 0.92529 0.98375 1.22160 0.94955 0.94982 0.97006 1.21825 1.05907 1.01440 0.94772 1.20307 0.95049 0.91611 0.89367 1.40749 1.54666 1.07093 1.13035 1.20172 1.40256 0.81471 1.03717 0.86582 1.26376 0.95757 1.05832 0.94495 1.69829 1.40307 1.38338 1.07680 0.84624 0.78141 0.75086 0.79055 1.17351 1.20274 1.20267 1.72767 1.25776 1.08437 1.17838 1.72293 1.05034 1.32666 0.96281 0.94437 0.89700 0.92000 0.94302 0.90355 0.93792 0.91354 0.89793 0.93778 0.81145 0.83706 0.77277 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.41 71.98 0.61 -2.26 16 2 C 0.00 0.01 0.88 -52.93 -0.05 -0.03 16 3 C -0.13 -3.29 7.82 71.98 0.56 -2.73 16 4 C -0.13 -2.70 8.09 71.98 0.58 -2.11 16 5 C -0.04 -1.27 5.63 42.69 0.24 -1.03 16 6 C -0.06 -2.15 9.20 22.49 0.21 -1.95 16 7 C -0.20 -8.47 9.42 22.67 0.21 -8.25 16 8 C 0.28 13.98 7.71 133.16 1.03 15.00 16 9 N -0.55 -28.98 5.44 -188.84 -1.03 -30.01 16 10 C -0.33 -16.76 9.56 84.04 0.80 -15.96 16 11 H 0.12 5.45 5.71 -2.91 -0.02 5.44 16 12 C -0.02 -1.22 5.50 84.87 0.47 -0.75 16 13 N -0.92 -50.54 13.05 21.65 0.28 -50.26 16 14 Si 1.01 39.25 29.55 68.60 2.03 41.28 16 15 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 16 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 17 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 18 N -0.39 -19.69 11.54 -55.10 -0.64 -20.32 16 19 N -0.22 -9.86 10.20 -47.54 -0.48 -10.34 16 20 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.06 1.24 8.11 -2.39 -0.02 1.22 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.31 7.87 -2.39 -0.02 1.29 16 26 H 0.07 1.19 6.76 -2.39 -0.02 1.18 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.17 4.16 6.81 -2.91 -0.02 4.14 16 30 H 0.15 5.57 6.05 -2.91 -0.02 5.56 16 31 H 0.39 22.24 8.02 -92.71 -0.74 21.49 16 32 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -62.22 269.80 5.21 -57.01 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.38 Total: 32.72 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.66 Total: -20.07 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -1.87 Total: -110.93 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -62.22 5.21 -57.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259150193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.975 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds