Wall clock time and date at job start Sun Mar 29 2020 22:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47498 * 2 1 4 4 C 1.50696 * 109.47392 * 179.97438 * 3 2 1 5 5 C 1.38822 * 119.98303 * 124.99897 * 4 3 2 6 6 C 1.38574 * 118.04401 * 180.02562 * 5 4 3 7 7 C 1.39574 * 117.90607 * 359.97438 * 6 5 4 8 8 N 1.38871 * 120.16243 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99812 * 185.00407 * 8 7 6 10 10 C 1.36904 * 120.00105 * 5.00500 * 8 7 6 11 11 H 1.07996 * 120.00027 * 24.03823 * 10 8 7 12 12 C 1.38816 * 119.99994 * 204.03783 * 10 8 7 13 13 N 1.31566 * 120.00165 * 10.48972 * 12 10 8 14 14 Si 1.86797 * 120.00310 * 190.49429 * 12 10 8 15 15 H 1.48508 * 109.46693 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47466 * 119.99666 * 14 12 10 17 17 H 1.48497 * 109.47090 * 240.00142 * 14 12 10 18 18 N 1.32577 * 119.66985 * 359.97438 * 7 6 5 19 19 N 1.28353 * 122.06130 * 0.02562 * 18 7 6 20 20 H 1.09005 * 109.46557 * 59.99968 * 1 2 3 21 21 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47023 * 300.00503 * 1 2 3 23 23 H 1.09001 * 109.47465 * 240.00000 * 2 1 3 24 24 H 1.08999 * 109.47234 * 119.99958 * 2 1 3 25 25 H 1.08997 * 109.47161 * 59.99263 * 3 2 1 26 26 H 1.09008 * 109.47006 * 300.00070 * 3 2 1 27 27 H 1.07994 * 120.97554 * 0.02562 * 5 4 3 28 28 H 1.07997 * 121.04126 * 179.73260 * 6 5 4 29 29 H 1.08998 * 109.47673 * 93.73144 * 9 8 7 30 30 H 1.09010 * 109.47131 * 213.73295 * 9 8 7 31 31 H 1.09004 * 109.47119 * 333.72605 * 9 8 7 32 32 H 0.96996 * 120.00334 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2412 2.1320 -0.9842 6 6 5.6261 2.1046 -0.9455 7 6 6.2368 1.3850 0.0828 8 7 7.6218 1.3259 0.1660 9 6 8.2593 0.4816 1.1795 10 6 8.3914 2.0565 -0.6990 11 1 7.9863 2.9419 -1.1662 12 6 9.6924 1.6592 -0.9755 13 7 10.1192 0.4805 -0.5764 14 14 10.8373 2.7983 -1.9143 15 1 10.1206 4.0555 -2.2477 16 1 12.0220 3.1109 -1.0752 17 1 11.2791 2.1338 -3.1666 18 7 5.4881 0.7584 0.9797 19 7 4.2056 0.7884 0.9372 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7173 2.6737 -1.7577 28 1 6.2143 2.6205 -1.6899 29 1 8.4836 -0.4948 0.7502 30 1 9.1836 0.9520 1.5151 31 1 7.5850 0.3597 2.0272 32 1 11.0282 0.2027 -0.7700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259295047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:45 Heat of formation + Delta-G solvation = 52.685783 kcal Electronic energy + Delta-G solvation = -14619.402046 eV Core-core repulsion = 12194.344653 eV Total energy + Delta-G solvation = -2425.057393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74717 -36.57269 -34.70207 -32.28461 -31.88632 -29.94065 -26.86001 -26.47551 -24.13605 -22.83250 -21.34497 -20.69652 -17.62288 -16.51697 -16.08900 -14.97126 -14.67254 -14.54098 -14.07449 -13.59065 -13.18941 -12.91494 -12.55795 -12.40658 -11.88169 -11.59137 -11.36159 -11.27554 -10.94158 -10.89129 -10.54224 -10.51299 -10.42125 -9.83970 -9.67463 -9.10324 -8.94057 -8.35420 -7.11542 -6.54557 -4.01690 2.03030 2.29451 3.04142 3.07624 3.11866 3.85671 4.56012 4.60685 4.99310 5.19119 5.26235 5.37287 5.56503 5.64428 5.78354 6.01010 6.01727 6.06561 6.12730 6.14139 6.36797 6.52796 6.63944 6.65609 6.80992 6.91130 7.12906 7.19523 7.26179 7.33020 7.76763 8.40957 9.03655 9.28707 10.16027 10.42469 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058204 B = 0.006201 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.949674 B = 4514.300747 C = 4824.479138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.038 4.038 4 C -0.065 4.065 5 C -0.082 4.082 6 C -0.189 4.189 7 C 0.296 3.704 8 N -0.406 5.406 9 C 0.123 3.877 10 C -0.316 4.316 11 H 0.099 0.901 12 C 0.035 3.965 13 N -0.862 5.862 14 Si 0.933 3.067 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.278 1.278 18 N -0.345 5.345 19 N -0.196 5.196 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 2.294 -1.525 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.077 4.077 4 C -0.217 4.217 5 C -0.110 4.110 6 C -0.224 4.224 7 C 0.051 3.949 8 N -0.095 5.095 9 C -0.020 4.020 10 C -0.445 4.445 11 H 0.117 0.883 12 C -0.172 4.172 13 N -0.496 5.496 14 Si 0.759 3.241 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.203 1.203 18 N -0.205 5.205 19 N -0.041 5.041 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.152 0.848 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.052 1.227 -0.188 8.147 hybrid contribution 0.857 1.408 -1.913 2.525 sum -7.195 2.635 -2.101 7.945 Atomic orbital electron populations 1.21792 0.96532 1.01130 1.01332 1.21470 0.94503 0.96942 1.02660 1.20069 0.89331 0.96914 1.01371 1.21800 0.96854 1.05011 0.98030 1.21708 0.93891 0.97505 0.97898 1.21580 0.94427 1.05425 1.00922 1.20065 0.87257 0.95054 0.92569 1.42441 0.99219 1.39192 1.28665 1.21469 0.95921 0.95223 0.89422 1.19710 0.94669 1.06505 1.23617 0.88342 1.25472 0.98339 0.96176 0.97240 1.70103 1.18273 1.17471 1.43764 0.85757 0.79695 0.79707 0.78971 1.19037 1.20224 1.20345 1.72803 0.98527 1.24562 1.24576 1.72291 1.01377 1.11830 1.18620 0.93163 0.93150 0.92910 0.92528 0.91058 0.91698 0.91812 0.85882 0.84791 0.92222 0.92062 0.93466 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.65 5.80 -26.73 -0.15 -1.80 16 3 C -0.04 -0.56 5.63 -27.88 -0.16 -0.72 16 4 C -0.06 -1.26 6.26 -82.36 -0.52 -1.78 16 5 C -0.08 -1.56 9.81 -39.24 -0.39 -1.94 16 6 C -0.19 -4.13 9.35 -38.96 -0.36 -4.49 16 7 C 0.30 7.31 7.41 -154.83 -1.15 6.17 16 8 N -0.41 -10.45 3.12 -122.29 -0.38 -10.83 16 9 C 0.12 3.01 8.79 59.85 0.53 3.54 16 10 C -0.32 -8.03 8.93 -15.07 -0.13 -8.16 16 11 H 0.10 2.38 6.39 -52.49 -0.34 2.05 16 12 C 0.03 0.86 5.14 -17.45 -0.09 0.77 16 13 N -0.86 -22.20 10.64 55.49 0.59 -21.61 16 14 Si 0.93 19.00 29.57 -169.99 -5.03 13.98 16 15 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 N -0.35 -8.55 10.21 31.23 0.32 -8.24 16 19 N -0.20 -4.43 11.05 33.62 0.37 -4.06 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.81 7.92 -51.92 -0.41 0.40 16 27 H 0.12 1.85 8.00 -52.49 -0.42 1.43 16 28 H 0.13 2.79 6.41 -52.49 -0.34 2.45 16 29 H 0.06 1.53 7.41 -51.93 -0.38 1.14 16 30 H 0.06 1.50 7.25 -51.92 -0.38 1.12 16 31 H 0.05 1.10 7.21 -51.93 -0.37 0.72 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.25 16 LS Contribution 270.49 15.07 4.08 4.08 Total: -1.00 -27.89 270.49 -6.40 -34.29 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.30 Total: 2.09 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.05 Total: -9.69 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.90 Total: -44.74 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.89 -6.40 -34.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259295047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.977 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds