Wall clock time and date at job start Sun Mar 29 2020 22:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47498 * 2 1 4 4 C 1.50696 * 109.47392 * 179.97438 * 3 2 1 5 5 C 1.38822 * 119.98303 * 124.99897 * 4 3 2 6 6 C 1.38574 * 118.04401 * 180.02562 * 5 4 3 7 7 C 1.39574 * 117.90607 * 359.97438 * 6 5 4 8 8 N 1.38871 * 120.16243 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99812 * 185.00407 * 8 7 6 10 10 C 1.36904 * 120.00105 * 5.00500 * 8 7 6 11 11 H 1.07996 * 120.00027 * 24.03823 * 10 8 7 12 12 C 1.38816 * 119.99994 * 204.03783 * 10 8 7 13 13 N 1.31566 * 120.00165 * 10.48972 * 12 10 8 14 14 Si 1.86797 * 120.00310 * 190.49429 * 12 10 8 15 15 H 1.48508 * 109.46693 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47466 * 119.99666 * 14 12 10 17 17 H 1.48497 * 109.47090 * 240.00142 * 14 12 10 18 18 N 1.32577 * 119.66985 * 359.97438 * 7 6 5 19 19 N 1.28353 * 122.06130 * 0.02562 * 18 7 6 20 20 H 1.09005 * 109.46557 * 59.99968 * 1 2 3 21 21 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47023 * 300.00503 * 1 2 3 23 23 H 1.09001 * 109.47465 * 240.00000 * 2 1 3 24 24 H 1.08999 * 109.47234 * 119.99958 * 2 1 3 25 25 H 1.08997 * 109.47161 * 59.99263 * 3 2 1 26 26 H 1.09008 * 109.47006 * 300.00070 * 3 2 1 27 27 H 1.07994 * 120.97554 * 0.02562 * 5 4 3 28 28 H 1.07997 * 121.04126 * 179.73260 * 6 5 4 29 29 H 1.08998 * 109.47673 * 93.73144 * 9 8 7 30 30 H 1.09010 * 109.47131 * 213.73295 * 9 8 7 31 31 H 1.09004 * 109.47119 * 333.72605 * 9 8 7 32 32 H 0.96996 * 120.00334 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2412 2.1320 -0.9842 6 6 5.6261 2.1046 -0.9455 7 6 6.2368 1.3850 0.0828 8 7 7.6218 1.3259 0.1660 9 6 8.2593 0.4816 1.1795 10 6 8.3914 2.0565 -0.6990 11 1 7.9863 2.9419 -1.1662 12 6 9.6924 1.6592 -0.9755 13 7 10.1192 0.4805 -0.5764 14 14 10.8373 2.7983 -1.9143 15 1 10.1206 4.0555 -2.2477 16 1 12.0220 3.1109 -1.0752 17 1 11.2791 2.1338 -3.1666 18 7 5.4881 0.7584 0.9797 19 7 4.2056 0.7884 0.9372 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7173 2.6737 -1.7577 28 1 6.2143 2.6205 -1.6899 29 1 8.4836 -0.4948 0.7502 30 1 9.1836 0.9520 1.5151 31 1 7.5850 0.3597 2.0272 32 1 11.0282 0.2027 -0.7700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259295047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:44 Heat of formation + Delta-G solvation = 37.351548 kcal Electronic energy + Delta-G solvation = -14620.066988 eV Core-core repulsion = 12194.344653 eV Total energy + Delta-G solvation = -2425.722335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48384 -38.33381 -36.01367 -34.07217 -33.49660 -31.53867 -28.70740 -27.89902 -25.91742 -24.36100 -23.04264 -21.94799 -19.42997 -18.31301 -17.81929 -16.56476 -16.14043 -16.03245 -15.61333 -15.29429 -14.66409 -14.59213 -14.00666 -13.77101 -13.37371 -13.07198 -12.92191 -12.74212 -12.68505 -12.30795 -12.08218 -12.00648 -11.65504 -11.42510 -11.35347 -10.82575 -10.65890 -10.07257 -8.95932 -8.37032 -5.93132 0.33201 0.61214 1.42276 1.45582 1.56561 2.17402 2.79980 2.82895 3.20411 3.75392 3.98688 4.12892 4.27215 4.32445 4.39667 4.48569 4.69345 4.78619 4.89974 4.93480 4.98419 5.08774 5.14408 5.25038 5.30556 5.31297 5.35249 5.54879 5.60626 5.72459 5.95412 6.56012 7.19864 7.46255 8.40176 8.62670 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058204 B = 0.006201 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.949674 B = 4514.300747 C = 4824.479138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.038 4.038 4 C -0.048 4.048 5 C -0.069 4.069 6 C -0.201 4.201 7 C 0.280 3.720 8 N -0.436 5.436 9 C 0.144 3.856 10 C -0.337 4.337 11 H 0.105 0.895 12 C -0.010 4.010 13 N -0.900 5.900 14 Si 1.004 2.996 15 H -0.255 1.255 16 H -0.276 1.276 17 H -0.277 1.277 18 N -0.379 5.379 19 N -0.227 5.227 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.175 0.825 28 H 0.143 0.857 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 3.900 -3.036 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.077 4.077 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.235 4.235 7 C 0.036 3.964 8 N -0.129 5.129 9 C 0.000 4.000 10 C -0.466 4.466 11 H 0.122 0.878 12 C -0.213 4.213 13 N -0.536 5.536 14 Si 0.826 3.174 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.203 1.203 18 N -0.236 5.236 19 N -0.069 5.069 20 H 0.086 0.914 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.193 0.807 28 H 0.160 0.840 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.391 2.822 -1.672 10.896 hybrid contribution 1.235 0.900 -1.439 2.099 sum -9.156 3.722 -3.111 10.362 Atomic orbital electron populations 1.21730 0.93745 1.02056 1.02557 1.21426 0.96912 0.95995 1.01148 1.20290 0.85715 0.97990 1.03701 1.22730 0.99362 1.01871 0.96165 1.22284 0.92740 0.96271 0.98309 1.21856 0.96030 1.05226 1.00436 1.20474 0.87271 0.95298 0.93365 1.42535 0.99730 1.40839 1.29801 1.21143 0.95431 0.94086 0.89338 1.20008 0.95402 1.06992 1.24167 0.87764 1.26382 0.99488 0.97463 0.97966 1.70217 1.18666 1.19199 1.45487 0.84711 0.77394 0.77966 0.77340 1.17865 1.20116 1.20251 1.72755 0.99664 1.25719 1.25510 1.72267 1.00685 1.13483 1.20493 0.91442 0.92516 0.92142 0.93354 0.93438 0.90519 0.88219 0.80727 0.83958 0.94413 0.93027 0.93338 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 71.98 0.71 -1.89 16 2 C -0.12 -2.94 5.80 30.59 0.18 -2.76 16 3 C -0.04 -0.97 5.63 29.85 0.17 -0.81 16 4 C -0.05 -1.72 6.26 42.69 0.27 -1.45 16 5 C -0.07 -2.35 9.81 22.49 0.22 -2.13 16 6 C -0.20 -8.51 9.35 22.67 0.21 -8.30 16 7 C 0.28 14.03 7.41 133.16 0.99 15.02 16 8 N -0.44 -23.14 3.12 -540.80 -1.69 -24.82 16 9 C 0.14 7.42 8.79 127.77 1.12 8.55 16 10 C -0.34 -17.44 8.93 84.04 0.75 -16.69 16 11 H 0.10 5.06 6.39 -2.91 -0.02 5.04 16 12 C -0.01 -0.52 5.14 84.87 0.44 -0.08 16 13 N -0.90 -47.92 10.64 21.65 0.23 -47.69 16 14 Si 1.00 39.11 29.57 68.60 2.03 41.14 16 15 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 16 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 18 N -0.38 -19.09 10.21 -55.10 -0.56 -19.65 16 19 N -0.23 -10.15 11.05 -47.53 -0.53 -10.68 16 20 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.41 7.96 -2.39 -0.02 1.39 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.10 1.91 7.92 -2.38 -0.02 1.89 16 27 H 0.18 4.19 8.00 -2.91 -0.02 4.16 16 28 H 0.14 5.72 6.41 -2.91 -0.02 5.70 16 29 H 0.04 2.05 7.41 -2.39 -0.02 2.03 16 30 H 0.05 2.67 7.25 -2.38 -0.02 2.65 16 31 H 0.05 2.39 7.21 -2.38 -0.02 2.37 16 32 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -62.19 270.49 5.64 -56.55 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.10 Total: 15.71 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.06 Total: -10.55 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -2.54 Total: -102.84 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -62.19 5.64 -56.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259295047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.898 kcal (2) G-P(sol) polarization free energy of solvation -62.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds