Wall clock time and date at job start Sun Mar 29 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47437 * 2 1 4 4 C 1.50706 * 109.47161 * 239.99976 * 2 1 3 5 5 C 1.38175 * 120.39779 * 84.99868 * 4 2 1 6 6 C 1.39671 * 118.31587 * 179.97438 * 5 4 2 7 7 N 1.38528 * 120.53559 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99739 * 185.00346 * 7 6 5 9 9 C 1.36930 * 119.99814 * 5.00247 * 7 6 5 10 10 H 1.08005 * 120.00196 * 23.96018 * 9 7 6 11 11 C 1.38847 * 120.00133 * 203.95229 * 9 7 6 12 12 N 1.31541 * 119.99782 * 10.49344 * 11 9 7 13 13 Si 1.86802 * 120.00220 * 190.49441 * 11 9 7 14 14 H 1.48491 * 109.46959 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47036 * 120.00057 * 13 11 9 16 16 H 1.48495 * 109.46903 * 239.99847 * 13 11 9 17 17 N 1.33065 * 118.92956 * 0.02562 * 6 5 4 18 18 C 1.31703 * 120.68438 * 359.97438 * 17 6 5 19 19 N 1.31825 * 121.84666 * 359.74406 * 18 17 6 20 20 H 1.09000 * 109.46645 * 60.00058 * 1 2 3 21 21 H 1.09000 * 109.47246 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46828 * 299.99675 * 1 2 3 23 23 H 1.08999 * 109.47143 * 120.00526 * 2 1 3 24 24 H 1.09000 * 109.47462 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47384 * 300.00378 * 3 2 1 26 26 H 1.09005 * 109.47154 * 60.00376 * 3 2 1 27 27 H 1.07993 * 120.83930 * 359.96060 * 5 4 2 28 28 H 1.09003 * 109.46967 * 93.79450 * 8 7 6 29 29 H 1.09005 * 109.47109 * 213.78366 * 8 7 6 30 30 H 1.08997 * 109.47524 * 333.78824 * 8 7 6 31 31 H 0.97004 * 119.99809 * 180.02562 * 12 11 9 32 32 H 1.07999 * 119.07744 * 179.97438 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.1675 -0.0291 -2.4250 6 6 2.6374 -0.7300 -3.5380 7 7 2.7900 -0.0925 -4.7583 8 6 3.1784 -0.8617 -5.9431 9 6 2.5777 1.2567 -4.8572 10 1 2.6749 1.8841 -3.9834 11 6 2.2376 1.8181 -6.0806 12 7 1.9176 1.0428 -7.0939 13 14 2.2344 3.6746 -6.2878 14 1 2.6288 4.3161 -5.0080 15 1 3.1996 4.0558 -7.3501 16 1 0.8730 4.1277 -6.6703 17 7 2.9353 -2.0203 -3.4074 18 6 2.7909 -2.6295 -2.2487 19 7 2.3551 -1.9948 -1.1787 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8901 27 1 1.9158 1.0186 -2.4962 28 1 2.2845 -1.1668 -6.4872 29 1 3.8034 -0.2443 -6.5883 30 1 3.7361 -1.7462 -5.6353 31 1 1.6804 1.4350 -7.9488 32 1 3.0401 -3.6776 -2.1721 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259297888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:00 Heat of formation + Delta-G solvation = 46.013909 kcal Electronic energy + Delta-G solvation = -15059.922699 eV Core-core repulsion = 12634.575992 eV Total energy + Delta-G solvation = -2425.346707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78848 -36.54506 -35.23219 -32.43497 -30.76687 -29.56916 -26.85545 -26.63226 -24.47961 -23.37660 -21.81895 -19.57686 -17.68896 -16.45397 -16.10834 -14.84448 -14.28554 -14.06763 -13.84566 -13.78608 -13.27935 -13.07993 -12.86838 -12.33374 -11.82500 -11.57390 -11.31992 -11.05704 -10.88434 -10.88108 -10.65181 -10.54091 -10.48090 -9.87650 -9.36649 -9.12497 -8.63897 -7.98764 -7.17595 -6.53454 -4.02117 2.23365 2.52113 3.07301 3.09239 3.13606 3.88206 4.64639 4.69288 4.89928 5.11927 5.24910 5.46882 5.58006 5.71289 5.90025 6.11206 6.12803 6.13639 6.26118 6.36344 6.56268 6.62116 6.65632 6.72359 6.89145 6.92003 7.21863 7.26390 7.51097 7.86375 8.15404 8.54621 9.08686 9.23748 9.65960 10.44509 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.009824 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.844497 B = 2849.423832 C = 3646.240600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 C -0.144 4.144 4 C 0.186 3.814 5 C -0.292 4.292 6 C 0.380 3.620 7 N -0.405 5.405 8 C 0.124 3.876 9 C -0.313 4.313 10 H 0.100 0.900 11 C 0.034 3.966 12 N -0.864 5.864 13 Si 0.932 3.068 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.278 1.278 17 N -0.607 5.607 18 C 0.326 3.674 19 N -0.613 5.613 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.130 0.870 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.272 0.728 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 0.891 7.016 7.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 C -0.202 4.202 4 C 0.048 3.952 5 C -0.323 4.323 6 C 0.133 3.867 7 N -0.094 5.094 8 C -0.020 4.020 9 C -0.442 4.442 10 H 0.117 0.883 11 C -0.172 4.172 12 N -0.499 5.499 13 Si 0.757 3.243 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.204 1.204 17 N -0.336 5.336 18 C 0.034 3.966 19 N -0.339 5.339 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.258 0.191 6.509 6.517 hybrid contribution -0.238 1.664 -0.498 1.754 sum -0.496 1.856 6.011 6.311 Atomic orbital electron populations 1.21752 0.94251 1.01906 1.01589 1.19905 0.95732 0.95101 0.95200 1.21875 1.01169 0.95321 1.01812 1.20866 0.91154 0.89903 0.93275 1.21615 1.14466 1.02521 0.93746 1.18582 0.92192 0.87914 0.87966 1.42497 1.56158 1.06663 1.04125 1.21434 0.99912 0.93912 0.86722 1.19706 1.46398 0.81026 0.97086 0.88283 1.25471 0.95307 1.00887 0.95575 1.70097 1.41358 1.35584 1.02819 0.85773 0.78209 0.81364 0.78906 1.18962 1.20294 1.20351 1.67788 1.27954 1.09818 1.28059 1.24070 0.90479 0.98921 0.83129 1.68016 1.23619 1.09820 1.32451 0.92419 0.92605 0.92620 0.90080 0.92679 0.91849 0.92686 0.85225 0.92350 0.92191 0.93603 0.91749 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.18 37.16 0.34 -1.64 16 2 C -0.04 -0.64 3.27 -91.77 -0.30 -0.94 16 3 C -0.14 -2.07 8.64 37.16 0.32 -1.75 16 4 C 0.19 3.79 5.82 -82.31 -0.48 3.31 16 5 C -0.29 -6.58 8.41 -39.07 -0.33 -6.91 16 6 C 0.38 9.39 7.36 -154.71 -1.14 8.25 16 7 N -0.41 -10.44 3.11 -122.22 -0.38 -10.82 16 8 C 0.12 3.01 8.79 59.85 0.53 3.53 16 9 C -0.31 -8.02 8.95 -15.05 -0.13 -8.16 16 10 H 0.10 2.45 6.40 -52.48 -0.34 2.11 16 11 C 0.03 0.85 5.14 -17.45 -0.09 0.76 16 12 N -0.86 -22.33 10.64 55.49 0.59 -21.74 16 13 Si 0.93 19.18 29.57 -169.99 -5.03 14.16 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 N -0.61 -14.23 9.18 -13.79 -0.13 -14.36 16 18 C 0.33 6.78 12.28 -92.21 -1.13 5.65 16 19 N -0.61 -12.84 10.37 -10.87 -0.11 -12.95 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.96 6.58 -51.93 -0.34 0.62 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.13 2.86 4.80 -52.49 -0.25 2.61 16 28 H 0.06 1.49 7.41 -51.93 -0.38 1.10 16 29 H 0.06 1.47 7.25 -51.93 -0.38 1.09 16 30 H 0.05 1.05 7.22 -51.93 -0.37 0.67 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.17 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 266.87 15.07 4.02 4.02 Total: -1.00 -28.04 266.87 -7.61 -35.65 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.16 Total: 3.93 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.41 Total: 2.10 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.03 Total: -59.86 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.04 -7.61 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259297888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.662 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds