Wall clock time and date at job start Sun Mar 29 2020 22:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47437 * 2 1 4 4 C 1.50706 * 109.47161 * 239.99976 * 2 1 3 5 5 C 1.38175 * 120.39779 * 84.99868 * 4 2 1 6 6 C 1.39671 * 118.31587 * 179.97438 * 5 4 2 7 7 N 1.38528 * 120.53559 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99739 * 185.00346 * 7 6 5 9 9 C 1.36930 * 119.99814 * 5.00247 * 7 6 5 10 10 H 1.08005 * 120.00196 * 23.96018 * 9 7 6 11 11 C 1.38847 * 120.00133 * 203.95229 * 9 7 6 12 12 N 1.31541 * 119.99782 * 10.49344 * 11 9 7 13 13 Si 1.86802 * 120.00220 * 190.49441 * 11 9 7 14 14 H 1.48491 * 109.46959 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47036 * 120.00057 * 13 11 9 16 16 H 1.48495 * 109.46903 * 239.99847 * 13 11 9 17 17 N 1.33065 * 118.92956 * 0.02562 * 6 5 4 18 18 C 1.31703 * 120.68438 * 359.97438 * 17 6 5 19 19 N 1.31825 * 121.84666 * 359.74406 * 18 17 6 20 20 H 1.09000 * 109.46645 * 60.00058 * 1 2 3 21 21 H 1.09000 * 109.47246 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46828 * 299.99675 * 1 2 3 23 23 H 1.08999 * 109.47143 * 120.00526 * 2 1 3 24 24 H 1.09000 * 109.47462 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47384 * 300.00378 * 3 2 1 26 26 H 1.09005 * 109.47154 * 60.00376 * 3 2 1 27 27 H 1.07993 * 120.83930 * 359.96060 * 5 4 2 28 28 H 1.09003 * 109.46967 * 93.79450 * 8 7 6 29 29 H 1.09005 * 109.47109 * 213.78366 * 8 7 6 30 30 H 1.08997 * 109.47524 * 333.78824 * 8 7 6 31 31 H 0.97004 * 119.99809 * 180.02562 * 12 11 9 32 32 H 1.07999 * 119.07744 * 179.97438 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.1675 -0.0291 -2.4250 6 6 2.6374 -0.7300 -3.5380 7 7 2.7900 -0.0925 -4.7583 8 6 3.1784 -0.8617 -5.9431 9 6 2.5777 1.2567 -4.8572 10 1 2.6749 1.8841 -3.9834 11 6 2.2376 1.8181 -6.0806 12 7 1.9176 1.0428 -7.0939 13 14 2.2344 3.6746 -6.2878 14 1 2.6288 4.3161 -5.0080 15 1 3.1996 4.0558 -7.3501 16 1 0.8730 4.1277 -6.6703 17 7 2.9353 -2.0203 -3.4074 18 6 2.7909 -2.6295 -2.2487 19 7 2.3551 -1.9948 -1.1787 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8901 27 1 1.9158 1.0186 -2.4962 28 1 2.2845 -1.1668 -6.4872 29 1 3.8034 -0.2443 -6.5883 30 1 3.7361 -1.7462 -5.6353 31 1 1.6804 1.4350 -7.9488 32 1 3.0401 -3.6776 -2.1721 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259297888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:59 Heat of formation + Delta-G solvation = 31.625365 kcal Electronic energy + Delta-G solvation = -15060.546633 eV Core-core repulsion = 12634.575992 eV Total energy + Delta-G solvation = -2425.970641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51759 -38.32916 -36.68737 -34.25945 -32.48738 -31.30409 -28.51839 -28.01671 -26.29907 -25.01781 -23.49339 -21.11771 -19.49255 -18.24597 -17.82648 -16.55378 -15.89579 -15.82717 -15.48300 -15.32380 -14.84179 -14.62826 -14.50999 -13.77386 -13.35933 -13.10103 -12.93167 -12.71840 -12.58699 -12.26405 -12.11115 -12.08686 -11.86920 -11.64939 -11.09765 -10.92659 -10.37664 -9.74529 -9.03936 -8.39729 -5.96388 0.53368 0.74970 1.41099 1.45284 1.55341 2.17036 2.84565 2.86654 3.36680 3.44535 3.75501 4.09019 4.28573 4.33018 4.50710 4.67940 4.75931 4.83897 4.90651 4.93490 4.95010 5.02545 5.14618 5.21118 5.26407 5.31504 5.40190 5.48055 5.76116 6.06338 6.34935 6.70378 7.21131 7.42815 7.85323 8.59872 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.009824 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.844497 B = 2849.423832 C = 3646.240600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.040 4.040 3 C -0.140 4.140 4 C 0.192 3.808 5 C -0.310 4.310 6 C 0.363 3.637 7 N -0.431 5.431 8 C 0.143 3.857 9 C -0.335 4.335 10 H 0.100 0.900 11 C -0.008 4.008 12 N -0.897 5.897 13 Si 1.000 3.000 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.276 1.276 17 N -0.625 5.625 18 C 0.322 3.678 19 N -0.612 5.612 20 H 0.044 0.956 21 H 0.048 0.952 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.275 0.725 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 1.550 8.950 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.197 4.197 4 C 0.053 3.947 5 C -0.340 4.340 6 C 0.118 3.882 7 N -0.123 5.123 8 C -0.001 4.001 9 C -0.464 4.464 10 H 0.118 0.882 11 C -0.211 4.211 12 N -0.533 5.533 13 Si 0.823 3.177 14 H -0.180 1.180 15 H -0.199 1.199 16 H -0.201 1.201 17 N -0.355 5.355 18 C 0.031 3.969 19 N -0.337 5.337 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.147 0.853 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.537 0.823 8.477 8.534 hybrid contribution -0.161 1.307 -0.935 1.615 sum -0.698 2.130 7.542 7.868 Atomic orbital electron populations 1.21727 0.92765 1.01797 1.02692 1.20084 0.96832 0.95704 0.93318 1.21851 1.00735 0.94282 1.02878 1.21606 0.89196 0.89729 0.94214 1.21729 1.15443 1.02745 0.94112 1.19029 0.92122 0.88773 0.88253 1.42649 1.58054 1.06987 1.04582 1.21160 0.98711 0.93804 0.86417 1.19948 1.47390 0.81353 0.97671 0.88217 1.26362 0.94540 1.05287 0.94951 1.70199 1.42394 1.37391 1.03287 0.84757 0.78103 0.75818 0.79068 1.17985 1.19917 1.20125 1.67842 1.28644 1.09543 1.29455 1.24901 0.89185 1.00438 0.82333 1.68181 1.23100 1.10048 1.32323 0.93707 0.93325 0.89150 0.88782 0.93371 0.93062 0.89324 0.85290 0.94366 0.93189 0.92840 0.91563 0.77292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.18 71.98 0.66 -2.79 16 2 C -0.04 -1.19 3.27 -11.54 -0.04 -1.22 16 3 C -0.14 -3.66 8.64 71.98 0.62 -3.04 16 4 C 0.19 7.53 5.82 42.44 0.25 7.78 16 5 C -0.31 -13.91 8.41 22.60 0.19 -13.72 16 6 C 0.36 18.13 7.36 133.16 0.98 19.11 16 7 N -0.43 -22.74 3.11 -540.58 -1.68 -24.42 16 8 C 0.14 7.17 8.79 127.77 1.12 8.30 16 9 C -0.34 -17.50 8.95 84.04 0.75 -16.75 16 10 H 0.10 5.02 6.40 -2.91 -0.02 5.00 16 11 C -0.01 -0.42 5.14 84.88 0.44 0.02 16 12 N -0.90 -47.42 10.64 21.65 0.23 -47.19 16 13 Si 1.00 39.36 29.57 68.60 2.03 41.39 16 14 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 15 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 16 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 17 N -0.63 -29.13 9.18 -197.55 -1.81 -30.95 16 18 C 0.32 12.88 12.28 180.90 2.22 15.10 16 19 N -0.61 -24.44 10.37 -188.31 -1.95 -26.39 16 20 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.46 6.58 -2.39 -0.02 1.45 16 26 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.13 5.73 4.80 -2.91 -0.01 5.72 16 28 H 0.04 2.02 7.41 -2.39 -0.02 2.01 16 29 H 0.05 2.54 7.25 -2.38 -0.02 2.52 16 30 H 0.05 2.51 7.22 -2.39 -0.02 2.50 16 31 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.21 6.47 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -60.25 266.87 5.12 -55.14 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.11 Total: 19.62 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 7.19 Total: 12.79 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.22 Total: -128.94 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -60.25 5.12 -55.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259297888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.764 kcal (2) G-P(sol) polarization free energy of solvation -60.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds