Wall clock time and date at job start Sun Mar 29 2020 22:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38120 * 120.40155 * 2 1 4 4 C 1.39623 * 118.32995 * 180.24304 * 3 2 1 5 5 N 1.38547 * 120.52573 * 179.80299 * 4 3 2 6 6 C 1.46491 * 120.00256 * 359.71996 * 5 4 3 7 7 H 1.09002 * 109.47497 * 35.00166 * 6 5 4 8 8 C 1.53003 * 109.47390 * 274.99900 * 6 5 4 9 9 C 1.50705 * 109.47410 * 155.00071 * 6 5 4 10 10 H 1.08002 * 119.99462 * 5.46471 * 9 6 5 11 11 C 1.37873 * 120.00386 * 185.45968 * 9 6 5 12 12 N 1.31514 * 119.99648 * 9.55850 * 11 9 6 13 13 Si 1.86797 * 119.99977 * 189.55869 * 11 9 6 14 14 H 1.48499 * 109.46943 * 84.99593 * 13 11 9 15 15 H 1.48499 * 109.46977 * 204.99296 * 13 11 9 16 16 H 1.48493 * 109.47289 * 324.99421 * 13 11 9 17 17 N 1.32987 * 118.93997 * 359.53144 * 4 3 2 18 18 C 1.31751 * 120.68582 * 0.24707 * 17 4 3 19 19 C 1.50702 * 119.08234 * 180.02562 * 18 17 4 20 20 N 1.31781 * 121.83127 * 359.97438 * 18 17 4 21 21 H 1.09007 * 109.47131 * 270.23613 * 1 2 3 22 22 H 1.09001 * 109.47501 * 30.23350 * 1 2 3 23 23 H 1.09002 * 109.47385 * 150.23118 * 1 2 3 24 24 H 1.08002 * 120.83403 * 0.02562 * 3 2 1 25 25 H 0.97004 * 119.99444 * 179.71886 * 5 4 3 26 26 H 1.09007 * 109.46576 * 63.66008 * 8 6 5 27 27 H 1.08996 * 109.47788 * 183.66104 * 8 6 5 28 28 H 1.09000 * 109.46859 * 303.66562 * 8 6 5 29 29 H 0.97003 * 119.99477 * 179.97438 * 12 11 9 30 30 H 1.09005 * 109.47212 * 89.99923 * 19 18 17 31 31 H 1.08998 * 109.46834 * 210.00496 * 19 18 17 32 32 H 1.09004 * 109.46957 * 330.00087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1408 -0.0052 5 7 4.3476 2.3081 -0.0095 6 6 3.6735 3.6086 -0.0149 7 1 2.7587 3.5461 0.5745 8 6 3.3276 3.9980 -1.4535 9 6 4.5853 4.6496 0.5818 10 1 5.5991 4.3902 0.8487 11 6 4.1253 5.9331 0.7868 12 7 2.8468 6.2045 0.6409 13 14 5.3180 7.2864 1.2719 14 1 5.9419 7.8572 0.0512 15 1 4.5859 8.3542 1.9991 16 1 6.3744 6.7236 2.1508 17 7 4.2023 -0.0455 -0.0004 18 6 3.4955 -1.1573 0.0042 19 6 4.2139 -2.4820 0.0101 20 7 2.1777 -1.1432 0.0048 21 1 -0.3634 0.0042 1.0277 22 1 -0.3634 0.8879 -0.5174 23 1 -0.3634 -0.8921 -0.5102 24 1 1.6862 2.1380 0.0004 25 1 5.3167 2.2640 -0.0090 26 1 2.6170 3.2801 -1.8633 27 1 2.8849 4.9939 -1.4641 28 1 4.2345 3.9971 -2.0582 29 1 2.5231 7.1074 0.7855 30 1 4.3869 -2.7970 1.0392 31 1 3.6050 -3.2279 -0.5008 32 1 5.1697 -2.3793 -0.5039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259304389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:00 Heat of formation + Delta-G solvation = 15.308821 kcal Electronic energy + Delta-G solvation = -14712.990237 eV Core-core repulsion = 12286.312057 eV Total energy + Delta-G solvation = -2426.678180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83330 -38.12317 -35.41707 -34.89063 -32.92726 -30.30236 -29.87525 -28.69139 -27.28424 -24.06675 -22.95020 -21.89931 -19.57368 -18.04556 -17.51254 -16.73437 -16.27964 -16.16764 -15.38778 -15.13369 -14.38593 -14.28136 -14.14599 -13.76832 -13.55780 -13.22484 -13.00654 -12.96541 -12.88789 -12.70376 -12.45789 -12.18363 -11.72608 -11.53131 -11.17955 -10.61326 -10.42407 -10.10648 -8.89057 -8.27194 -6.38599 0.18525 0.51442 1.41963 1.43438 1.52230 2.22852 2.46005 2.95271 3.06122 3.23023 3.50159 3.93132 4.30532 4.50358 4.53916 4.66968 4.75666 4.78202 4.81757 4.84308 4.92535 4.98218 5.06459 5.21291 5.26925 5.53342 5.60822 5.73063 5.89711 6.00832 6.51364 6.67325 6.91093 7.30065 7.45401 8.81308 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041549 B = 0.006883 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.746764 B = 4067.129507 C = 4503.544432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.194 3.806 3 C -0.319 4.319 4 C 0.429 3.571 5 N -0.689 5.689 6 C 0.276 3.724 7 H 0.025 0.975 8 C -0.134 4.134 9 C -0.555 4.555 10 H 0.062 0.938 11 C 0.027 3.973 12 N -0.910 5.910 13 Si 0.964 3.036 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.271 1.271 17 N -0.611 5.611 18 C 0.340 3.660 19 C -0.074 4.074 20 N -0.584 5.584 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.134 0.866 25 H 0.399 0.601 26 H 0.029 0.971 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.269 0.731 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -10.453 -1.712 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 C -0.348 4.348 4 C 0.184 3.816 5 N -0.316 5.316 6 C 0.173 3.827 7 H 0.043 0.957 8 C -0.193 4.193 9 C -0.593 4.593 10 H 0.080 0.920 11 C -0.175 4.175 12 N -0.547 5.547 13 Si 0.789 3.211 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.196 1.196 17 N -0.339 5.339 18 C 0.071 3.929 19 C -0.132 4.132 20 N -0.307 5.307 21 H 0.112 0.888 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.152 0.848 25 H 0.234 0.766 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.502 -10.889 -1.697 11.122 hybrid contribution 0.509 1.969 0.277 2.053 sum -0.993 -8.919 -1.421 9.086 Atomic orbital electron populations 1.20795 0.85628 1.04590 1.04384 1.21890 0.98770 0.87033 0.87030 1.22105 0.93813 1.01252 1.17630 1.18977 0.89404 0.86938 0.86282 1.45229 1.08723 1.02801 1.74831 1.18593 0.92970 0.77756 0.93396 0.95703 1.21948 0.99057 1.00718 0.97547 1.21414 0.98920 0.95400 1.43552 0.92012 1.25614 0.96664 1.00582 0.94620 1.70041 1.14120 1.21585 1.48985 0.85483 0.78792 0.78392 0.78467 1.19638 1.20734 1.19557 1.67850 1.41933 0.97704 1.26410 1.23705 0.87107 0.94604 0.87455 1.20608 0.99824 0.88168 1.04630 1.68168 1.09365 1.29815 1.23355 0.88757 0.89474 0.88961 0.84840 0.76621 0.95166 0.92344 0.94336 0.92221 0.88595 0.88309 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 10.21 71.23 0.73 -1.64 16 2 C 0.19 6.66 6.82 42.42 0.29 6.95 16 3 C -0.32 -12.70 8.64 22.58 0.20 -12.50 16 4 C 0.43 18.16 7.69 133.16 1.02 19.19 16 5 N -0.69 -30.38 5.22 -327.63 -1.71 -32.09 16 6 C 0.28 13.47 2.13 44.25 0.09 13.56 16 7 H 0.03 1.35 6.44 -2.39 -0.02 1.34 16 8 C -0.13 -6.16 9.34 71.98 0.67 -5.49 16 9 C -0.55 -29.05 8.66 25.60 0.22 -28.83 16 10 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 11 C 0.03 1.39 5.17 84.65 0.44 1.83 16 12 N -0.91 -49.50 12.16 21.45 0.26 -49.24 16 13 Si 0.96 41.40 29.55 68.60 2.03 43.43 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 N -0.61 -24.11 10.37 -185.44 -1.92 -26.03 16 18 C 0.34 11.71 7.64 138.77 1.06 12.77 16 19 C -0.07 -1.73 10.32 71.24 0.73 -0.99 16 20 N -0.58 -20.22 10.27 -176.28 -1.81 -22.03 16 21 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 22 H 0.09 1.95 8.10 -2.39 -0.02 1.93 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.13 5.48 6.26 -2.91 -0.02 5.46 16 25 H 0.40 16.92 8.65 -92.71 -0.80 16.11 16 26 H 0.03 1.27 7.75 -2.38 -0.02 1.25 16 27 H 0.06 2.89 6.83 -2.39 -0.02 2.88 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -59.71 274.42 2.62 -57.08 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.32 Total: 24.04 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.46 Total: 4.85 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -5.18 Total: -129.39 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -59.71 2.62 -57.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259304389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.390 kcal (2) G-P(sol) polarization free energy of solvation -59.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds