Wall clock time and date at job start Sun Mar 29 2020 22:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47008 * 2 1 4 4 C 1.50703 * 109.46912 * 120.00016 * 2 1 3 5 5 C 1.38817 * 119.98478 * 274.99960 * 4 2 1 6 6 C 1.38565 * 118.05136 * 180.02562 * 5 4 2 7 7 C 1.39581 * 117.89983 * 0.02562 * 6 5 4 8 8 N 1.38870 * 120.16073 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99825 * 185.00023 * 8 7 6 10 10 C 1.36904 * 120.00431 * 4.99143 * 8 7 6 11 11 H 1.08004 * 119.99816 * 24.23913 * 10 8 7 12 12 C 1.38811 * 120.00202 * 204.23336 * 10 8 7 13 13 N 1.31566 * 120.00286 * 10.53283 * 12 10 8 14 14 Si 1.86806 * 120.00173 * 190.53656 * 12 10 8 15 15 H 1.48494 * 109.47253 * 84.95120 * 14 12 10 16 16 H 1.48497 * 109.47028 * 204.95847 * 14 12 10 17 17 H 1.48503 * 109.46398 * 324.95443 * 14 12 10 18 18 N 1.32582 * 119.66936 * 359.97438 * 7 6 5 19 19 N 1.28350 * 122.06110 * 0.02766 * 18 7 6 20 20 H 1.08995 * 109.47548 * 300.00044 * 1 2 3 21 21 H 1.08999 * 109.46925 * 60.00280 * 1 2 3 22 22 H 1.09003 * 109.47097 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47023 * 239.99859 * 2 1 3 24 24 H 1.09001 * 109.47492 * 299.99917 * 3 2 1 25 25 H 1.09004 * 109.47344 * 60.00055 * 3 2 1 26 26 H 1.09003 * 109.47060 * 179.97438 * 3 2 1 27 27 H 1.08003 * 120.97373 * 0.02562 * 5 4 2 28 28 H 1.07996 * 121.04908 * 179.73129 * 6 5 4 29 29 H 1.08995 * 109.47197 * 93.79870 * 9 8 7 30 30 H 1.08999 * 109.46958 * 213.79746 * 9 8 7 31 31 H 1.08998 * 109.46635 * 333.79569 * 9 8 7 32 32 H 0.97003 * 120.00250 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1647 -0.0176 2.4261 6 6 2.6307 -0.7100 3.5323 7 6 2.9385 -2.0622 3.3744 8 7 3.4095 -2.8010 4.4518 9 6 3.8350 -4.1895 4.2579 10 6 3.4764 -2.2319 5.6952 11 1 2.8355 -1.3986 5.9428 12 6 4.3677 -2.7260 6.6376 13 7 5.2879 -3.5958 6.2803 14 14 4.2607 -2.1561 8.4134 15 1 3.2585 -2.9784 9.1376 16 1 5.5877 -2.3075 9.0626 17 1 3.8510 -0.7293 8.4513 18 7 2.7789 -2.6378 2.1907 19 7 2.3468 -1.9896 1.1707 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.9120 1.0303 2.4922 28 1 2.7563 -0.2177 4.4853 29 1 4.9097 -4.2184 4.0783 30 1 3.6000 -4.7695 5.1503 31 1 3.3119 -4.6134 3.4007 32 1 5.9110 -3.9408 6.9388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259353597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:48 Heat of formation + Delta-G solvation = 56.820169 kcal Electronic energy + Delta-G solvation = -14833.252856 eV Core-core repulsion = 12408.374743 eV Total energy + Delta-G solvation = -2424.878113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81370 -36.69366 -35.02303 -32.28872 -31.45868 -29.08988 -27.02233 -26.68583 -24.65591 -23.01946 -21.87182 -20.01317 -17.61121 -16.67317 -16.04564 -15.14449 -14.57742 -14.24213 -13.84739 -13.63820 -13.13873 -13.02919 -12.39575 -12.31205 -11.81312 -11.59984 -11.49271 -11.28053 -10.91502 -10.86580 -10.68522 -10.54890 -10.49366 -9.79883 -9.67858 -9.09032 -8.94176 -8.34098 -7.11628 -6.53890 -4.01539 2.03945 2.30609 3.05625 3.07453 3.10304 3.86026 4.56695 4.59451 4.99749 5.07756 5.23168 5.50089 5.59913 5.76204 5.82422 5.90200 6.01854 6.07823 6.13175 6.21020 6.32036 6.51906 6.56148 6.64933 6.83483 6.91358 7.14137 7.19924 7.26424 7.32912 7.77355 8.41485 9.04129 9.29317 10.16881 10.43066 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048453 B = 0.006980 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.735967 B = 4010.221297 C = 4368.135390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 C -0.144 4.144 4 C -0.056 4.056 5 C -0.081 4.081 6 C -0.189 4.189 7 C 0.297 3.703 8 N -0.406 5.406 9 C 0.123 3.877 10 C -0.317 4.317 11 H 0.098 0.902 12 C 0.035 3.965 13 N -0.862 5.862 14 Si 0.934 3.066 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.268 1.268 18 N -0.346 5.346 19 N -0.200 5.200 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 6.500 -4.345 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 C -0.202 4.202 4 C -0.209 4.209 5 C -0.109 4.109 6 C -0.224 4.224 7 C 0.051 3.949 8 N -0.095 5.095 9 C -0.020 4.020 10 C -0.446 4.446 11 H 0.116 0.884 12 C -0.172 4.172 13 N -0.496 5.496 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.192 1.192 18 N -0.206 5.206 19 N -0.044 5.044 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.417 4.795 -4.791 8.090 hybrid contribution 0.024 1.562 1.956 2.503 sum -4.392 6.357 -2.835 8.231 Atomic orbital electron populations 1.21804 0.95140 1.01777 1.00930 1.19552 0.94932 0.94475 0.95093 1.21878 1.01173 0.95831 1.01279 1.21722 1.09999 0.93590 0.95549 1.21689 0.96749 0.99811 0.92626 1.21590 1.06482 0.94126 1.00154 1.20070 0.96515 0.89290 0.88984 1.42427 1.53586 1.09721 1.03781 1.21468 0.99751 0.81345 0.99485 1.19654 1.20099 1.17995 0.86831 0.88408 1.25471 0.94035 0.96691 1.01016 1.70092 1.15542 1.28886 1.35115 0.85826 0.77920 0.79371 0.80954 1.19904 1.20532 1.19224 1.72799 1.22357 1.29333 0.96075 1.72318 1.04217 1.06705 1.21156 0.93020 0.92974 0.92643 0.90445 0.92779 0.92607 0.92680 0.85757 0.84821 0.92203 0.92106 0.93464 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.18 37.16 0.34 -1.48 16 2 C -0.02 -0.30 3.25 -91.77 -0.30 -0.60 16 3 C -0.14 -1.78 8.63 37.16 0.32 -1.46 16 4 C -0.06 -1.09 5.87 -82.37 -0.48 -1.58 16 5 C -0.08 -1.54 9.26 -39.25 -0.36 -1.90 16 6 C -0.19 -4.14 9.35 -38.96 -0.36 -4.50 16 7 C 0.30 7.35 7.41 -154.83 -1.15 6.21 16 8 N -0.41 -10.47 3.12 -122.28 -0.38 -10.85 16 9 C 0.12 3.02 8.79 59.85 0.53 3.54 16 10 C -0.32 -8.06 8.93 -15.07 -0.13 -8.20 16 11 H 0.10 2.37 6.40 -52.48 -0.34 2.03 16 12 C 0.03 0.86 5.14 -17.45 -0.09 0.77 16 13 N -0.86 -22.27 10.65 55.49 0.59 -21.68 16 14 Si 0.93 19.05 29.57 -169.99 -5.03 14.03 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 N -0.35 -8.63 10.21 31.23 0.32 -8.31 16 19 N -0.20 -4.56 11.42 33.62 0.38 -4.18 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.12 1.91 6.41 -52.48 -0.34 1.57 16 28 H 0.13 2.79 6.41 -52.49 -0.34 2.46 16 29 H 0.06 1.53 7.40 -51.93 -0.38 1.15 16 30 H 0.06 1.49 7.27 -51.93 -0.38 1.11 16 31 H 0.05 1.10 7.21 -51.93 -0.37 0.73 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -28.01 266.88 -5.94 -33.95 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.16 Total: 2.21 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.69 Total: -9.19 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.91 Total: -45.01 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.01 -5.94 -33.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259353597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.771 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds