Wall clock time and date at job start Sun Mar 29 2020 22:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47008 * 2 1 4 4 C 1.50703 * 109.46912 * 120.00016 * 2 1 3 5 5 C 1.38817 * 119.98478 * 274.99960 * 4 2 1 6 6 C 1.38565 * 118.05136 * 180.02562 * 5 4 2 7 7 C 1.39581 * 117.89983 * 0.02562 * 6 5 4 8 8 N 1.38870 * 120.16073 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99825 * 185.00023 * 8 7 6 10 10 C 1.36904 * 120.00431 * 4.99143 * 8 7 6 11 11 H 1.08004 * 119.99816 * 24.23913 * 10 8 7 12 12 C 1.38811 * 120.00202 * 204.23336 * 10 8 7 13 13 N 1.31566 * 120.00286 * 10.53283 * 12 10 8 14 14 Si 1.86806 * 120.00173 * 190.53656 * 12 10 8 15 15 H 1.48494 * 109.47253 * 84.95120 * 14 12 10 16 16 H 1.48497 * 109.47028 * 204.95847 * 14 12 10 17 17 H 1.48503 * 109.46398 * 324.95443 * 14 12 10 18 18 N 1.32582 * 119.66936 * 359.97438 * 7 6 5 19 19 N 1.28350 * 122.06110 * 0.02766 * 18 7 6 20 20 H 1.08995 * 109.47548 * 300.00044 * 1 2 3 21 21 H 1.08999 * 109.46925 * 60.00280 * 1 2 3 22 22 H 1.09003 * 109.47097 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47023 * 239.99859 * 2 1 3 24 24 H 1.09001 * 109.47492 * 299.99917 * 3 2 1 25 25 H 1.09004 * 109.47344 * 60.00055 * 3 2 1 26 26 H 1.09003 * 109.47060 * 179.97438 * 3 2 1 27 27 H 1.08003 * 120.97373 * 0.02562 * 5 4 2 28 28 H 1.07996 * 121.04908 * 179.73129 * 6 5 4 29 29 H 1.08995 * 109.47197 * 93.79870 * 9 8 7 30 30 H 1.08999 * 109.46958 * 213.79746 * 9 8 7 31 31 H 1.08998 * 109.46635 * 333.79569 * 9 8 7 32 32 H 0.97003 * 120.00250 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1647 -0.0176 2.4261 6 6 2.6307 -0.7100 3.5323 7 6 2.9385 -2.0622 3.3744 8 7 3.4095 -2.8010 4.4518 9 6 3.8350 -4.1895 4.2579 10 6 3.4764 -2.2319 5.6952 11 1 2.8355 -1.3986 5.9428 12 6 4.3677 -2.7260 6.6376 13 7 5.2879 -3.5958 6.2803 14 14 4.2607 -2.1561 8.4134 15 1 3.2585 -2.9784 9.1376 16 1 5.5877 -2.3075 9.0626 17 1 3.8510 -0.7293 8.4513 18 7 2.7789 -2.6378 2.1907 19 7 2.3468 -1.9896 1.1707 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.9120 1.0303 2.4922 28 1 2.7563 -0.2177 4.4853 29 1 4.9097 -4.2184 4.0783 30 1 3.6000 -4.7695 5.1503 31 1 3.3119 -4.6134 3.4007 32 1 5.9110 -3.9408 6.9388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259353597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:47 Heat of formation + Delta-G solvation = 41.037055 kcal Electronic energy + Delta-G solvation = -14833.937263 eV Core-core repulsion = 12408.374743 eV Total energy + Delta-G solvation = -2425.562520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54956 -38.42365 -36.44058 -34.10228 -33.13391 -30.78774 -28.69676 -27.91816 -26.41439 -24.69499 -23.56366 -21.41208 -19.42012 -18.43000 -17.81534 -16.66745 -16.23484 -15.92193 -15.34487 -15.13161 -14.73247 -14.61176 -13.86251 -13.68816 -13.33548 -13.09496 -12.91671 -12.79156 -12.64482 -12.38226 -12.13802 -12.02454 -11.80551 -11.47407 -11.33733 -10.82539 -10.67227 -10.07374 -8.97058 -8.36981 -5.93597 0.32295 0.61390 1.41826 1.47223 1.54632 2.17371 2.79771 2.82072 3.19940 3.65486 4.00671 4.05361 4.24689 4.37892 4.43781 4.46257 4.68168 4.82273 4.91719 4.93063 4.97773 5.07867 5.13726 5.23063 5.26527 5.29525 5.37547 5.49841 5.62269 5.69639 5.95187 6.55807 7.19565 7.46070 8.39707 8.62450 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.048453 B = 0.006980 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.735967 B = 4010.221297 C = 4368.135390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 C -0.140 4.140 4 C -0.037 4.037 5 C -0.067 4.067 6 C -0.200 4.200 7 C 0.281 3.719 8 N -0.436 5.436 9 C 0.143 3.857 10 C -0.338 4.338 11 H 0.105 0.895 12 C -0.010 4.010 13 N -0.899 5.899 14 Si 1.003 2.997 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.256 1.256 18 N -0.380 5.380 19 N -0.234 5.234 20 H 0.058 0.942 21 H 0.083 0.917 22 H 0.036 0.964 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.172 0.828 28 H 0.143 0.857 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 9.385 -4.846 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.044 4.044 3 C -0.198 4.198 4 C -0.191 4.191 5 C -0.095 4.095 6 C -0.234 4.234 7 C 0.037 3.963 8 N -0.128 5.128 9 C 0.000 4.000 10 C -0.467 4.467 11 H 0.122 0.878 12 C -0.213 4.213 13 N -0.535 5.535 14 Si 0.826 3.174 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.180 1.180 18 N -0.237 5.237 19 N -0.075 5.075 20 H 0.077 0.923 21 H 0.102 0.898 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.190 0.810 28 H 0.161 0.839 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.811 7.682 -5.354 11.020 hybrid contribution 0.334 0.815 1.827 2.028 sum -5.477 8.497 -3.528 10.707 Atomic orbital electron populations 1.21774 0.93286 1.01262 1.02914 1.19783 0.96352 0.95762 0.92500 1.21870 1.00691 0.93778 1.03431 1.22661 1.06196 0.92575 0.97644 1.22202 0.94415 1.01753 0.91093 1.21859 1.06606 0.93248 1.01678 1.20466 0.96194 0.90628 0.89024 1.42522 1.55972 1.09978 1.04367 1.21146 0.98247 0.81780 0.98861 1.19965 1.20741 1.18717 0.87257 0.87768 1.26389 0.93345 0.96671 1.04897 1.70211 1.16559 1.30434 1.36343 0.84781 0.77684 0.79343 0.75624 1.19566 1.20568 1.17999 1.72741 1.23657 1.30695 0.96610 1.72293 1.05857 1.08631 1.20757 0.92319 0.89778 0.94465 0.90745 0.89884 0.91320 0.93494 0.81049 0.83948 0.94363 0.93046 0.93350 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.18 71.98 0.66 -2.35 16 2 C -0.02 -0.62 3.25 -11.54 -0.04 -0.66 16 3 C -0.14 -2.78 8.63 71.98 0.62 -2.16 16 4 C -0.04 -1.34 5.87 42.69 0.25 -1.09 16 5 C -0.07 -2.34 9.26 22.49 0.21 -2.13 16 6 C -0.20 -8.51 9.35 22.67 0.21 -8.30 16 7 C 0.28 14.15 7.41 133.16 0.99 15.14 16 8 N -0.44 -23.15 3.12 -540.80 -1.69 -24.84 16 9 C 0.14 7.42 8.79 127.77 1.12 8.54 16 10 C -0.34 -17.53 8.93 84.04 0.75 -16.78 16 11 H 0.10 5.05 6.40 -2.91 -0.02 5.03 16 12 C -0.01 -0.51 5.14 84.87 0.44 -0.08 16 13 N -0.90 -48.01 10.65 21.65 0.23 -47.78 16 14 Si 1.00 39.13 29.57 68.60 2.03 41.16 16 15 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 16 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 18 N -0.38 -19.29 10.21 -55.10 -0.56 -19.85 16 19 N -0.23 -10.64 11.42 -47.53 -0.54 -11.18 16 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.20 6.54 -2.38 -0.02 1.18 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.17 4.34 6.41 -2.91 -0.02 4.32 16 28 H 0.14 5.76 6.41 -2.91 -0.02 5.74 16 29 H 0.04 2.08 7.40 -2.39 -0.02 2.06 16 30 H 0.05 2.66 7.27 -2.39 -0.02 2.65 16 31 H 0.05 2.39 7.21 -2.39 -0.02 2.38 16 32 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -62.44 266.88 5.79 -56.65 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.11 Total: 15.71 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.21 Total: -9.87 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -2.56 Total: -103.64 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -62.44 5.79 -56.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259353597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.687 kcal (2) G-P(sol) polarization free energy of solvation -62.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds