Wall clock time and date at job start Sun Mar 29 2020 22:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47031 * 2 1 4 4 C 1.38117 * 120.39634 * 125.00066 * 3 2 1 5 5 C 1.39623 * 118.33265 * 180.02562 * 4 3 2 6 6 N 1.38546 * 120.53420 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99646 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47454 * 59.99696 * 13 11 9 15 15 H 1.48506 * 109.47297 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47261 * 299.99689 * 13 11 9 17 17 N 1.32999 * 118.93676 * 0.25318 * 5 4 3 18 18 C 1.31743 * 120.68477 * 359.48921 * 17 5 4 19 19 N 1.31794 * 121.83176 * 0.52731 * 18 17 5 20 20 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46721 * 299.99761 * 1 2 3 22 22 H 1.08998 * 109.47480 * 59.99572 * 1 2 3 23 23 H 1.09003 * 109.47166 * 240.00322 * 2 1 3 24 24 H 1.08998 * 109.47480 * 120.00428 * 2 1 3 25 25 H 1.08000 * 120.83742 * 0.04767 * 4 3 2 26 26 H 0.96998 * 120.00162 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.47464 * 60.00590 * 7 6 5 28 28 H 1.09001 * 109.47459 * 300.00305 * 7 6 5 29 29 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 30 30 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 31 31 H 0.96996 * 120.00505 * 179.97438 * 12 11 9 32 32 H 1.07996 * 119.08897 * 180.26147 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9095 1.8520 0.9759 5 6 3.3470 3.1773 0.9350 6 7 4.2265 3.6580 1.8914 7 6 4.7055 2.7735 2.9565 8 6 5.6570 3.5465 3.8721 9 6 6.1502 2.6364 4.9673 10 1 5.8179 1.6095 5.0066 11 6 7.0248 3.1150 5.9197 12 7 7.4290 4.3656 5.8720 13 14 7.6356 1.9871 7.2776 14 1 8.3541 0.8342 6.6779 15 1 8.5592 2.7373 8.1663 16 1 6.4796 1.4931 8.0682 17 7 2.9014 3.9724 -0.0336 18 6 2.0685 3.5173 -0.9472 19 7 1.6372 2.2720 -0.9361 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.2488 1.1808 1.7509 26 1 4.5252 4.5802 1.8559 27 1 5.2323 1.9268 2.5162 28 1 3.8571 2.4114 3.5372 29 1 6.5055 3.9088 3.2916 30 1 5.1299 4.3928 4.3123 31 1 8.0439 4.7024 6.5422 32 1 1.7264 4.1843 -1.7246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259357076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:35 Heat of formation + Delta-G solvation = 25.544051 kcal Electronic energy + Delta-G solvation = -14156.768055 eV Core-core repulsion = 11730.533709 eV Total energy + Delta-G solvation = -2426.234347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65308 -36.53512 -34.74096 -33.26872 -31.59677 -30.44326 -28.95095 -25.14375 -24.57295 -23.38873 -21.18946 -20.96227 -17.76612 -16.88628 -16.15326 -15.07770 -15.06013 -14.83123 -14.49517 -14.23403 -13.95344 -13.61498 -13.48547 -12.36433 -12.32152 -11.56610 -11.44911 -11.36678 -11.16757 -10.87521 -10.73311 -10.39981 -10.15578 -9.74069 -9.45708 -9.41989 -8.91616 -8.51637 -7.73602 -6.16500 -4.21089 1.31758 1.67369 3.25143 3.29884 3.31015 3.47377 4.15216 4.30007 4.34725 4.56845 5.01552 5.14213 5.20423 5.24718 5.32274 5.61028 5.76677 5.78514 5.86517 6.00782 6.08366 6.09120 6.20739 6.51941 6.57517 7.03743 7.38063 7.50083 7.65385 7.80840 7.94192 8.18766 8.57434 8.84122 9.44257 10.94983 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041300 B = 0.005239 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.808904 B = 5342.902587 C = 5945.944137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C 0.198 3.802 4 C -0.293 4.293 5 C 0.440 3.560 6 N -0.699 5.699 7 C 0.124 3.876 8 C 0.013 3.987 9 C -0.526 4.526 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.592 5.592 18 C 0.335 3.665 19 N -0.574 5.574 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.140 0.860 26 H 0.406 0.594 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 -5.843 -10.026 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C 0.057 3.943 4 C -0.321 4.321 5 C 0.195 3.805 6 N -0.328 5.328 7 C 0.001 3.999 8 C -0.024 4.024 9 C -0.565 4.565 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.318 5.318 18 C 0.045 3.955 19 N -0.295 5.295 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.158 0.842 26 H 0.242 0.758 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.139 -5.267 -10.403 15.452 hybrid contribution 0.912 -0.568 1.459 1.812 sum -9.227 -5.836 -8.944 14.113 Atomic orbital electron populations 1.21638 0.94012 1.01544 1.02688 1.20489 0.97030 0.90316 1.03257 1.21257 0.89251 0.95675 0.88152 1.22012 1.07488 0.97012 1.05609 1.18728 0.86286 0.88836 0.86691 1.45164 1.45417 1.15470 1.26715 1.21908 0.97907 0.93263 0.86813 1.19300 0.93576 0.96010 0.93525 1.20945 1.27651 0.97275 1.10621 0.92288 1.24997 0.96037 0.95168 0.97968 1.69942 1.33168 1.14365 1.35497 0.86557 0.78764 0.80565 0.81556 1.20080 1.21158 1.20078 1.67973 1.18444 1.38790 1.06585 1.24496 0.87684 0.90057 0.93310 1.68135 1.29512 1.04617 1.27233 0.92407 0.92942 0.91524 0.89823 0.90164 0.84197 0.75787 0.92532 0.92540 0.95716 0.95715 0.92637 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.78 37.16 0.36 -1.03 16 2 C -0.07 -0.79 6.36 -27.88 -0.18 -0.97 16 3 C 0.20 2.84 6.20 -82.33 -0.51 2.33 16 4 C -0.29 -4.60 9.02 -39.11 -0.35 -4.95 16 5 C 0.44 7.63 7.71 -154.77 -1.19 6.44 16 6 N -0.70 -12.56 5.71 -60.27 -0.34 -12.90 16 7 C 0.12 2.41 4.87 -4.04 -0.02 2.39 16 8 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 9 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 10 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 13 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 17 N -0.59 -9.93 10.47 -13.81 -0.14 -10.07 16 18 C 0.33 4.86 12.28 -92.20 -1.13 3.72 16 19 N -0.57 -8.47 10.03 -10.88 -0.11 -8.58 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 22 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 25 H 0.14 2.06 6.81 -52.49 -0.36 1.70 16 26 H 0.41 7.19 8.60 -40.82 -0.35 6.84 16 27 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 28 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 278.32 15.07 4.19 4.19 Total: -1.00 -29.38 278.32 -8.70 -38.09 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.44 Total: 3.19 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.58 Total: -4.66 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.14 Total: -56.55 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.38 -8.70 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259357076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.630 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds