Wall clock time and date at job start Sun Mar 29 2020 22:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47031 * 2 1 4 4 C 1.38117 * 120.39634 * 125.00066 * 3 2 1 5 5 C 1.39623 * 118.33265 * 180.02562 * 4 3 2 6 6 N 1.38546 * 120.53420 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99646 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47454 * 59.99696 * 13 11 9 15 15 H 1.48506 * 109.47297 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47261 * 299.99689 * 13 11 9 17 17 N 1.32999 * 118.93676 * 0.25318 * 5 4 3 18 18 C 1.31743 * 120.68477 * 359.48921 * 17 5 4 19 19 N 1.31794 * 121.83176 * 0.52731 * 18 17 5 20 20 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46721 * 299.99761 * 1 2 3 22 22 H 1.08998 * 109.47480 * 59.99572 * 1 2 3 23 23 H 1.09003 * 109.47166 * 240.00322 * 2 1 3 24 24 H 1.08998 * 109.47480 * 120.00428 * 2 1 3 25 25 H 1.08000 * 120.83742 * 0.04767 * 4 3 2 26 26 H 0.96998 * 120.00162 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.47464 * 60.00590 * 7 6 5 28 28 H 1.09001 * 109.47459 * 300.00305 * 7 6 5 29 29 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 30 30 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 31 31 H 0.96996 * 120.00505 * 179.97438 * 12 11 9 32 32 H 1.07996 * 119.08897 * 180.26147 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9095 1.8520 0.9759 5 6 3.3470 3.1773 0.9350 6 7 4.2265 3.6580 1.8914 7 6 4.7055 2.7735 2.9565 8 6 5.6570 3.5465 3.8721 9 6 6.1502 2.6364 4.9673 10 1 5.8179 1.6095 5.0066 11 6 7.0248 3.1150 5.9197 12 7 7.4290 4.3656 5.8720 13 14 7.6356 1.9871 7.2776 14 1 8.3541 0.8342 6.6779 15 1 8.5592 2.7373 8.1663 16 1 6.4796 1.4931 8.0682 17 7 2.9014 3.9724 -0.0336 18 6 2.0685 3.5173 -0.9472 19 7 1.6372 2.2720 -0.9361 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.2488 1.1808 1.7509 26 1 4.5252 4.5802 1.8559 27 1 5.2323 1.9268 2.5162 28 1 3.8571 2.4114 3.5372 29 1 6.5055 3.9088 3.2916 30 1 5.1299 4.3928 4.3123 31 1 8.0439 4.7024 6.5422 32 1 1.7264 4.1843 -1.7246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259357076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:35 Heat of formation + Delta-G solvation = 8.524002 kcal Electronic energy + Delta-G solvation = -14157.506100 eV Core-core repulsion = 11730.533709 eV Total energy + Delta-G solvation = -2426.972392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.84891 -37.95313 -35.90217 -35.09093 -33.00927 -31.65131 -30.51409 -26.88165 -25.60326 -24.76402 -22.76495 -22.20532 -19.10773 -18.55535 -17.66015 -16.57350 -16.34529 -16.23133 -15.85670 -15.57950 -15.40222 -14.68553 -14.56143 -14.23345 -13.37852 -13.26775 -13.02157 -12.56033 -12.53234 -12.38854 -12.05864 -11.69428 -11.63309 -11.56008 -11.40993 -10.67780 -10.56788 -10.12266 -9.08665 -8.24568 -6.36333 0.16187 0.43215 1.42983 1.45309 1.53133 2.08031 2.43034 2.96969 3.10956 3.28361 3.47516 3.81871 4.20294 4.25997 4.37495 4.43891 4.45118 4.57639 4.74299 4.80390 4.89191 5.08155 5.20437 5.26764 5.40001 5.49030 5.53034 5.70612 5.82126 6.11138 6.34996 6.60204 6.79233 7.33880 7.36907 8.87621 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041300 B = 0.005239 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.808904 B = 5342.902587 C = 5945.944137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C 0.199 3.801 4 C -0.304 4.304 5 C 0.423 3.577 6 N -0.707 5.707 7 C 0.147 3.853 8 C 0.019 3.981 9 C -0.543 4.543 10 H 0.070 0.930 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.265 1.265 17 N -0.610 5.610 18 C 0.331 3.669 19 N -0.576 5.576 20 H 0.081 0.919 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.148 0.852 26 H 0.404 0.596 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.265 0.735 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -7.768 -10.376 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C 0.057 3.943 4 C -0.333 4.333 5 C 0.179 3.821 6 N -0.336 5.336 7 C 0.023 3.977 8 C -0.018 4.018 9 C -0.581 4.581 10 H 0.088 0.912 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.190 1.190 17 N -0.337 5.337 18 C 0.042 3.958 19 N -0.297 5.297 20 H 0.099 0.901 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.166 0.834 26 H 0.239 0.761 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.064 -7.206 -10.784 17.048 hybrid contribution 1.118 0.047 1.461 1.840 sum -9.947 -7.160 -9.323 15.398 Atomic orbital electron populations 1.21609 0.93156 1.02846 1.01813 1.20640 0.97639 0.88173 1.04626 1.21855 0.88176 0.97151 0.87155 1.22190 1.08101 0.96480 1.06487 1.18915 0.86577 0.89738 0.86881 1.44947 1.46443 1.15152 1.27086 1.21469 0.97027 0.92614 0.86555 1.19128 0.93485 0.95507 0.93697 1.21434 1.27486 0.98098 1.11125 0.91159 1.25947 0.96311 0.96610 1.00633 1.70080 1.34059 1.16359 1.36609 0.85450 0.78373 0.78574 0.78365 1.18999 1.21173 1.19000 1.67987 1.19277 1.39327 1.07061 1.25228 0.86714 0.90609 0.93279 1.68259 1.29363 1.04782 1.27279 0.90062 0.93813 0.92359 0.88457 0.88739 0.83427 0.76096 0.91876 0.91924 0.98065 0.98080 0.92644 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.78 71.98 0.70 -1.63 16 2 C -0.07 -1.38 6.36 29.85 0.19 -1.19 16 3 C 0.20 5.31 6.20 42.42 0.26 5.57 16 4 C -0.30 -9.18 9.02 22.58 0.20 -8.98 16 5 C 0.42 14.46 7.71 133.16 1.03 15.49 16 6 N -0.71 -25.61 5.71 -344.58 -1.97 -27.58 16 7 C 0.15 5.69 4.87 86.38 0.42 6.11 16 8 C 0.02 0.96 5.09 29.85 0.15 1.11 16 9 C -0.54 -28.98 9.11 25.60 0.23 -28.74 16 10 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 11 C 0.00 0.19 5.46 84.65 0.46 0.66 16 12 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 13 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 15 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 N -0.61 -20.03 10.47 -197.61 -2.07 -22.09 16 18 C 0.33 9.06 12.28 180.90 2.22 11.28 16 19 N -0.58 -15.91 10.03 -188.34 -1.89 -17.80 16 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.06 1.09 7.98 -2.39 -0.02 1.07 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.54 7.93 -2.39 -0.02 1.52 16 25 H 0.15 4.12 6.81 -2.91 -0.02 4.10 16 26 H 0.40 14.75 8.60 -92.71 -0.80 13.95 16 27 H 0.06 2.36 7.97 -2.39 -0.02 2.34 16 28 H 0.06 2.34 7.97 -2.39 -0.02 2.32 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 31 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.22 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -62.55 278.32 2.58 -59.97 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.31 Total: 17.99 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.88 Total: -0.32 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.64 Total: -121.92 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -62.55 2.58 -59.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259357076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.499 kcal (2) G-P(sol) polarization free energy of solvation -62.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds