Wall clock time and date at job start Sun Mar 29 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38116 * 120.40287 * 2 1 4 4 C 1.39623 * 118.33495 * 179.97438 * 3 2 1 5 5 N 1.38548 * 120.53089 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99824 * 0.27704 * 5 4 3 7 7 C 1.52996 * 109.47059 * 179.72373 * 6 5 4 8 8 C 1.50697 * 109.47491 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00490 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99545 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00173 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47199 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47080 * 119.99932 * 12 10 8 15 15 H 1.48498 * 109.47127 * 239.99826 * 12 10 8 16 16 N 1.32993 * 118.94005 * 0.24657 * 4 3 2 17 17 C 1.31755 * 120.68188 * 359.49102 * 16 4 3 18 18 C 1.50694 * 119.08242 * 180.26449 * 17 16 4 19 19 N 1.31791 * 121.83102 * 0.52544 * 17 16 4 20 20 H 1.08998 * 109.47498 * 90.00331 * 1 2 3 21 21 H 1.08998 * 109.47163 * 210.00302 * 1 2 3 22 22 H 1.09006 * 109.47014 * 330.00010 * 1 2 3 23 23 H 1.08002 * 120.83219 * 359.95044 * 3 2 1 24 24 H 0.97001 * 119.99731 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.46963 * 299.72168 * 6 5 4 26 26 H 1.08994 * 109.47567 * 59.72320 * 6 5 4 27 27 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 28 28 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 29 29 H 0.97004 * 119.99855 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.46994 * 270.25601 * 18 17 16 31 31 H 1.08999 * 109.47399 * 30.25074 * 18 17 16 32 32 H 1.08993 * 109.47254 * 150.25528 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1912 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3081 0.0000 6 6 3.6735 3.6087 0.0050 7 6 4.7194 4.7253 0.0103 8 6 4.0259 6.0632 0.0148 9 1 2.9470 6.1122 0.0136 10 6 4.7687 7.2248 0.0205 11 7 6.0825 7.1651 0.0225 12 14 3.9090 8.8832 0.0254 13 1 2.4382 8.6783 0.0227 14 1 4.3007 9.6401 1.2414 15 1 4.3048 9.6494 -1.1835 16 7 4.2024 -0.0455 -0.0040 17 6 3.4956 -1.1573 0.0012 18 6 4.2140 -2.4820 0.0019 19 7 2.1777 -1.1432 0.0007 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6862 2.1380 -0.0008 24 1 5.3167 2.2640 0.0008 25 1 3.0506 3.6984 -0.8850 26 1 3.0496 3.6911 0.8949 27 1 5.3422 4.6355 0.9003 28 1 5.3434 4.6429 -0.8796 29 1 6.6051 7.9823 0.0268 30 1 4.3877 -2.8017 -1.0257 31 1 5.1694 -2.3770 0.5160 32 1 3.6047 -3.2255 0.5156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259388781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:44 Heat of formation + Delta-G solvation = 27.092170 kcal Electronic energy + Delta-G solvation = -14175.859997 eV Core-core repulsion = 11749.692782 eV Total energy + Delta-G solvation = -2426.167215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67852 -36.52372 -34.18554 -33.40731 -31.77980 -29.18945 -28.98625 -27.56907 -24.89126 -22.18568 -21.78817 -20.78804 -17.74067 -16.80017 -15.94100 -15.25818 -14.96863 -14.63956 -14.08921 -14.03005 -13.93770 -13.32560 -12.75270 -12.43146 -12.39067 -12.29582 -12.15671 -11.34724 -11.26757 -10.87464 -10.69318 -10.39959 -10.15795 -9.73881 -9.38440 -9.27696 -8.91624 -8.52028 -7.71127 -6.16642 -4.20913 1.31142 1.69468 3.22992 3.30294 3.33484 3.45972 4.09978 4.22225 4.34763 4.55698 5.04802 5.20547 5.30845 5.47055 5.53743 5.59584 5.63030 5.68626 5.84133 5.95537 6.06657 6.09576 6.13976 6.52971 6.61944 7.07942 7.39456 7.50614 7.67653 7.81550 7.96335 8.19456 8.60645 8.84821 9.44515 10.94953 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046843 B = 0.005188 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.596838 B = 5395.388402 C = 5961.925324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.197 3.803 3 C -0.301 4.301 4 C 0.443 3.557 5 N -0.699 5.699 6 C 0.125 3.875 7 C 0.013 3.987 8 C -0.525 4.525 9 H 0.060 0.940 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.898 3.102 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.283 1.283 16 N -0.590 5.590 17 C 0.356 3.644 18 C -0.080 4.080 19 N -0.575 5.575 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.141 0.859 24 H 0.406 0.594 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 -13.486 -0.040 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.056 3.944 3 C -0.329 4.329 4 C 0.198 3.802 5 N -0.328 5.328 6 C 0.002 3.998 7 C -0.025 4.025 8 C -0.563 4.563 9 H 0.078 0.922 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.725 3.275 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.209 1.209 16 N -0.317 5.317 17 C 0.086 3.914 18 C -0.139 4.139 19 N -0.297 5.297 20 H 0.099 0.901 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.159 0.841 24 H 0.242 0.758 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.670 -13.957 -0.045 15.469 hybrid contribution -0.307 1.937 -0.024 1.962 sum -6.977 -12.019 -0.069 13.898 Atomic orbital electron populations 1.20705 0.88514 1.03497 1.03198 1.21273 0.96867 0.87768 0.88515 1.21960 0.93804 1.00732 1.16428 1.18691 0.88674 0.86715 0.86115 1.45148 1.09290 1.02776 1.75583 1.21898 0.97528 0.80218 1.00174 1.19311 0.93676 0.91261 0.98235 1.21024 0.93190 0.90206 1.51907 0.92176 1.25005 0.94842 0.99542 0.94849 1.69969 1.04726 1.28343 1.49934 0.86442 0.79781 0.83536 0.77713 1.19585 1.20873 1.20868 1.67783 1.41474 0.97521 1.24917 1.22783 0.86598 0.93538 0.88469 1.20485 0.99768 0.90215 1.03412 1.68043 1.09226 1.29933 1.22527 0.90135 0.90376 0.90431 0.84148 0.75824 0.92548 0.92556 0.95710 0.95712 0.92762 0.90052 0.90009 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.21 36.00 0.37 -0.71 16 2 C 0.20 2.95 6.82 -82.33 -0.56 2.38 16 3 C -0.30 -4.88 9.08 -39.11 -0.35 -5.24 16 4 C 0.44 7.96 7.71 -154.77 -1.19 6.77 16 5 N -0.70 -12.81 5.71 -60.27 -0.34 -13.15 16 6 C 0.12 2.45 4.87 -4.04 -0.02 2.43 16 7 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 8 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 12 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 N -0.59 -10.41 10.37 -9.96 -0.10 -10.51 16 17 C 0.36 5.61 7.64 -157.23 -1.20 4.41 16 18 C -0.08 -0.90 10.32 36.00 0.37 -0.53 16 19 N -0.58 -9.10 10.27 -7.07 -0.07 -9.17 16 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 23 H 0.14 2.11 6.87 -52.49 -0.36 1.75 16 24 H 0.41 7.31 8.60 -40.82 -0.35 6.96 16 25 H 0.06 1.09 7.98 -51.93 -0.41 0.67 16 26 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 279.33 15.07 4.21 4.21 Total: -1.00 -30.15 279.33 -8.20 -38.35 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.46 Total: 2.67 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.14 Total: -3.13 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.22 Total: -57.89 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.15 -8.20 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.441 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds