Wall clock time and date at job start Sun Mar 29 2020 22:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38116 * 120.40287 * 2 1 4 4 C 1.39623 * 118.33495 * 179.97438 * 3 2 1 5 5 N 1.38548 * 120.53089 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99824 * 0.27704 * 5 4 3 7 7 C 1.52996 * 109.47059 * 179.72373 * 6 5 4 8 8 C 1.50697 * 109.47491 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00490 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99545 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00173 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47199 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47080 * 119.99932 * 12 10 8 15 15 H 1.48498 * 109.47127 * 239.99826 * 12 10 8 16 16 N 1.32993 * 118.94005 * 0.24657 * 4 3 2 17 17 C 1.31755 * 120.68188 * 359.49102 * 16 4 3 18 18 C 1.50694 * 119.08242 * 180.26449 * 17 16 4 19 19 N 1.31791 * 121.83102 * 0.52544 * 17 16 4 20 20 H 1.08998 * 109.47498 * 90.00331 * 1 2 3 21 21 H 1.08998 * 109.47163 * 210.00302 * 1 2 3 22 22 H 1.09006 * 109.47014 * 330.00010 * 1 2 3 23 23 H 1.08002 * 120.83219 * 359.95044 * 3 2 1 24 24 H 0.97001 * 119.99731 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.46963 * 299.72168 * 6 5 4 26 26 H 1.08994 * 109.47567 * 59.72320 * 6 5 4 27 27 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 28 28 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 29 29 H 0.97004 * 119.99855 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.46994 * 270.25601 * 18 17 16 31 31 H 1.08999 * 109.47399 * 30.25074 * 18 17 16 32 32 H 1.08993 * 109.47254 * 150.25528 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1912 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3081 0.0000 6 6 3.6735 3.6087 0.0050 7 6 4.7194 4.7253 0.0103 8 6 4.0259 6.0632 0.0148 9 1 2.9470 6.1122 0.0136 10 6 4.7687 7.2248 0.0205 11 7 6.0825 7.1651 0.0225 12 14 3.9090 8.8832 0.0254 13 1 2.4382 8.6783 0.0227 14 1 4.3007 9.6401 1.2414 15 1 4.3048 9.6494 -1.1835 16 7 4.2024 -0.0455 -0.0040 17 6 3.4956 -1.1573 0.0012 18 6 4.2140 -2.4820 0.0019 19 7 2.1777 -1.1432 0.0007 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6862 2.1380 -0.0008 24 1 5.3167 2.2640 0.0008 25 1 3.0506 3.6984 -0.8850 26 1 3.0496 3.6911 0.8949 27 1 5.3422 4.6355 0.9003 28 1 5.3434 4.6429 -0.8796 29 1 6.6051 7.9823 0.0268 30 1 4.3877 -2.8017 -1.0257 31 1 5.1694 -2.3770 0.5160 32 1 3.6047 -3.2255 0.5156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259388781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:43 Heat of formation + Delta-G solvation = 8.441039 kcal Electronic energy + Delta-G solvation = -14176.668771 eV Core-core repulsion = 11749.692782 eV Total energy + Delta-G solvation = -2426.975989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.90893 -37.98820 -35.48922 -35.12185 -33.31548 -30.86621 -29.96222 -28.68751 -26.73564 -23.69819 -23.01262 -22.31072 -19.10803 -18.61141 -17.44385 -16.52636 -16.51354 -16.20126 -15.62474 -15.56925 -15.10378 -14.27649 -14.16917 -13.79451 -13.62568 -13.30895 -13.22946 -12.97389 -12.94701 -12.48557 -12.45523 -11.71431 -11.66531 -11.58237 -11.38094 -10.63810 -10.48265 -10.17751 -9.09001 -8.25513 -6.37079 0.11467 0.41762 1.41966 1.42754 1.55594 2.04516 2.42172 2.88187 3.10253 3.17560 3.41230 3.82170 4.22290 4.33532 4.43998 4.45112 4.54150 4.74807 4.76036 4.79109 4.80748 4.93445 5.02848 5.20849 5.30571 5.49290 5.52124 5.71455 5.83274 6.10588 6.33988 6.59764 6.78865 7.33220 7.35786 8.87164 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046843 B = 0.005188 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.596838 B = 5395.388402 C = 5961.925324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.196 3.804 3 C -0.314 4.314 4 C 0.425 3.575 5 N -0.706 5.706 6 C 0.147 3.853 7 C 0.019 3.981 8 C -0.541 4.541 9 H 0.070 0.930 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.969 3.031 13 H -0.257 1.257 14 H -0.280 1.280 15 H -0.280 1.280 16 N -0.610 5.610 17 C 0.343 3.657 18 C -0.077 4.077 19 N -0.581 5.581 20 H 0.096 0.904 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.150 0.850 24 H 0.403 0.597 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.265 0.735 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -13.991 -0.076 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.054 3.946 3 C -0.342 4.342 4 C 0.181 3.819 5 N -0.336 5.336 6 C 0.024 3.976 7 C -0.019 4.019 8 C -0.580 4.580 9 H 0.089 0.911 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.793 3.207 13 H -0.181 1.181 14 H -0.206 1.206 15 H -0.206 1.206 16 N -0.338 5.338 17 C 0.074 3.926 18 C -0.135 4.135 19 N -0.303 5.303 20 H 0.115 0.885 21 H 0.106 0.894 22 H 0.112 0.888 23 H 0.168 0.832 24 H 0.239 0.761 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.677 -14.499 -0.081 16.898 hybrid contribution 0.306 1.977 -0.016 2.001 sum -8.371 -12.522 -0.096 15.063 Atomic orbital electron populations 1.20830 0.85332 1.04816 1.04570 1.21982 0.98916 0.87041 0.86667 1.22157 0.93141 1.01854 1.17018 1.18916 0.89474 0.86615 0.86881 1.44939 1.09125 1.02660 1.76846 1.21471 0.95868 0.79511 1.00749 1.19137 0.94172 0.92636 0.95911 1.21491 0.93907 0.91296 1.51257 0.91141 1.25957 0.95469 1.03720 0.94423 1.70099 1.06403 1.29469 1.51173 0.85333 0.79229 0.78473 0.77631 1.18111 1.20584 1.20574 1.67817 1.42255 0.97937 1.25756 1.23651 0.87077 0.94448 0.87432 1.20625 0.99866 0.88338 1.04698 1.68195 1.09261 1.30264 1.22588 0.88511 0.89370 0.88811 0.83195 0.76136 0.91892 0.91898 0.98061 0.98061 0.92648 0.88514 0.89432 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 10.21 71.24 0.73 -1.07 16 2 C 0.20 5.47 6.82 42.42 0.29 5.76 16 3 C -0.31 -9.80 9.08 22.58 0.20 -9.60 16 4 C 0.43 15.15 7.71 133.16 1.03 16.17 16 5 N -0.71 -26.20 5.71 -344.60 -1.97 -28.17 16 6 C 0.15 5.79 4.87 86.38 0.42 6.22 16 7 C 0.02 0.94 5.09 29.85 0.15 1.10 16 8 C -0.54 -29.00 9.11 25.60 0.23 -28.77 16 9 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 10 C 0.00 0.15 5.46 84.65 0.46 0.61 16 11 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 12 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 13 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 N -0.61 -21.31 10.37 -185.44 -1.92 -23.23 16 17 C 0.34 10.39 7.64 138.76 1.06 11.45 16 18 C -0.08 -1.59 10.32 71.23 0.73 -0.85 16 19 N -0.58 -17.35 10.27 -176.28 -1.81 -19.16 16 20 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.09 1.43 8.09 -2.38 -0.02 1.41 16 23 H 0.15 4.28 6.87 -2.91 -0.02 4.26 16 24 H 0.40 15.06 8.60 -92.71 -0.80 14.26 16 25 H 0.06 2.39 7.98 -2.38 -0.02 2.37 16 26 H 0.06 2.38 7.97 -2.39 -0.02 2.36 16 27 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 28 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -64.40 279.33 2.24 -62.16 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.32 Total: 17.52 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.31 Total: 1.03 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -5.42 Total: -125.14 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -64.40 2.24 -62.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.605 kcal (2) G-P(sol) polarization free energy of solvation -64.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds