Wall clock time and date at job start Sun Mar 29 2020 22:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38120 * 120.39929 * 84.99729 * 4 2 1 6 6 C 1.39627 * 118.33307 * 180.02562 * 5 4 2 7 7 N 1.38536 * 120.53097 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47228 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00268 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00066 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00467 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46813 * 59.99705 * 13 11 9 15 15 H 1.48492 * 109.47290 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47020 * 300.00395 * 13 11 9 17 17 N 1.32995 * 118.93464 * 0.02562 * 6 5 4 18 18 C 1.31753 * 120.68803 * 359.97438 * 17 6 5 19 19 N 1.31788 * 121.82966 * 359.71869 * 18 17 6 20 20 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 25 25 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 27 27 H 1.08001 * 120.83349 * 0.03058 * 5 4 2 28 28 H 0.97002 * 119.99894 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47492 * 300.00042 * 8 7 6 30 30 H 1.09001 * 109.47029 * 60.00066 * 8 7 6 31 31 H 0.96999 * 120.00563 * 179.97438 * 12 11 9 32 32 H 1.08001 * 119.08204 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1673 -0.0293 -2.4245 6 6 2.6360 -0.7299 -3.5377 7 7 2.7883 -0.0918 -4.7579 8 6 2.4572 1.3293 -4.8878 9 6 2.7088 1.7763 -6.3048 10 1 3.0788 1.0723 -7.0354 11 6 2.4667 3.0840 -6.6685 12 7 2.0166 3.9415 -5.7786 13 14 2.7792 3.6383 -8.4247 14 1 1.9327 2.8454 -9.3521 15 1 2.4434 5.0788 -8.5564 16 1 4.2106 3.4313 -8.7618 17 7 2.9330 -2.0198 -3.4080 18 6 2.7888 -2.6297 -2.2491 19 7 2.3545 -1.9950 -1.1789 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9562 0.8901 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.9167 1.0188 -2.4954 28 1 3.1142 -0.5861 -5.5263 29 1 1.4067 1.4818 -4.6402 30 1 3.0789 1.9109 -4.2071 31 1 1.8465 4.8616 -6.0343 32 1 3.0381 -3.6778 -2.1729 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259444143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:03 Heat of formation + Delta-G solvation = 26.815040 kcal Electronic energy + Delta-G solvation = -14584.405154 eV Core-core repulsion = 12158.225922 eV Total energy + Delta-G solvation = -2426.179233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42255 -36.24562 -35.37474 -32.95149 -31.50146 -29.84891 -27.22716 -26.83681 -24.41085 -23.37565 -21.72779 -20.26333 -17.72462 -16.73910 -16.08248 -14.93654 -14.70792 -14.62919 -14.34627 -13.88075 -13.70985 -13.21906 -13.07333 -12.56234 -12.14552 -12.01055 -11.32726 -11.14966 -11.04790 -11.02504 -10.85573 -10.38336 -10.32130 -10.01653 -9.53806 -9.23806 -8.68510 -8.65444 -7.28227 -6.31228 -4.37543 1.60511 1.98895 3.19543 3.24240 3.26085 3.89592 4.27584 4.42373 4.44567 4.83108 5.06451 5.15290 5.29580 5.34919 5.53941 5.73793 5.81059 5.91549 5.96581 6.00425 6.18563 6.27360 6.35267 6.48098 6.79065 7.02814 7.21642 7.39984 7.51940 7.78880 8.11373 8.43257 8.68074 8.89689 9.29544 10.79147 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.006805 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.810828 B = 4113.417121 C = 4767.519992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.148 4.148 4 C 0.199 3.801 5 C -0.288 4.288 6 C 0.437 3.563 7 N -0.687 5.687 8 C 0.252 3.748 9 C -0.544 4.544 10 H 0.065 0.935 11 C 0.066 3.934 12 N -0.888 5.888 13 Si 0.907 3.093 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.598 5.598 18 C 0.330 3.670 19 N -0.582 5.582 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.143 0.857 28 H 0.400 0.600 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -5.595 8.782 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.206 4.206 4 C 0.058 3.942 5 C -0.317 4.317 6 C 0.191 3.809 7 N -0.313 5.313 8 C 0.131 3.869 9 C -0.582 4.582 10 H 0.083 0.917 11 C -0.138 4.138 12 N -0.525 5.525 13 Si 0.734 3.266 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.200 1.200 17 N -0.325 5.325 18 C 0.039 3.961 19 N -0.304 5.304 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.235 0.765 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.033 -6.027 8.808 10.723 hybrid contribution 0.113 1.022 -1.412 1.746 sum -0.920 -5.005 7.397 8.978 Atomic orbital electron populations 1.21778 0.93655 1.02087 1.02220 1.20012 0.96157 0.95480 0.94620 1.21915 1.01365 0.94767 1.02531 1.21150 0.89714 0.89531 0.93795 1.22025 1.12728 1.03308 0.93611 1.18810 0.86662 0.87921 0.87546 1.45439 1.66175 1.12683 1.07040 1.19282 0.96111 0.73538 0.97993 1.21114 1.46500 0.95930 0.94677 0.91709 1.24913 0.94432 0.96140 0.98286 1.69921 1.43702 1.04662 1.34194 0.86415 0.78939 0.77679 0.83614 1.19952 1.20948 1.19954 1.67963 1.26449 1.09443 1.28613 1.24389 0.89571 0.99459 0.82646 1.68129 1.20016 1.09778 1.32451 0.92487 0.92021 0.92196 0.89475 0.92079 0.92457 0.91510 0.83890 0.76520 0.95533 0.95511 0.92227 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.18 37.16 0.34 -1.37 16 2 C -0.04 -0.59 3.27 -91.77 -0.30 -0.89 16 3 C -0.15 -1.89 8.64 37.16 0.32 -1.57 16 4 C 0.20 3.40 5.82 -82.33 -0.48 2.92 16 5 C -0.29 -5.50 8.48 -39.11 -0.33 -5.83 16 6 C 0.44 8.96 7.71 -154.78 -1.19 7.77 16 7 N -0.69 -14.86 5.70 -61.45 -0.35 -15.21 16 8 C 0.25 6.18 4.68 -5.19 -0.02 6.15 16 9 C -0.54 -14.33 9.28 -34.44 -0.32 -14.65 16 10 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 13 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 N -0.60 -11.49 10.47 -13.81 -0.14 -11.64 16 18 C 0.33 5.55 12.28 -92.19 -1.13 4.41 16 19 N -0.58 -10.06 10.37 -10.88 -0.11 -10.18 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 27 H 0.14 2.77 5.24 -52.49 -0.27 2.49 16 28 H 0.40 8.30 8.45 -40.82 -0.34 7.95 16 29 H 0.03 0.69 7.97 -51.93 -0.41 0.28 16 30 H 0.03 0.70 7.97 -51.93 -0.41 0.28 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 274.49 15.07 4.14 4.14 Total: -1.00 -28.30 274.49 -8.25 -36.56 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.28 Total: 6.23 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.21 Total: -1.39 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.13 Total: -60.90 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.30 -8.25 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259444143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.372 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds