Wall clock time and date at job start Sun Mar 29 2020 22:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38120 * 120.39929 * 84.99729 * 4 2 1 6 6 C 1.39627 * 118.33307 * 180.02562 * 5 4 2 7 7 N 1.38536 * 120.53097 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47228 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00268 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00066 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00467 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46813 * 59.99705 * 13 11 9 15 15 H 1.48492 * 109.47290 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47020 * 300.00395 * 13 11 9 17 17 N 1.32995 * 118.93464 * 0.02562 * 6 5 4 18 18 C 1.31753 * 120.68803 * 359.97438 * 17 6 5 19 19 N 1.31788 * 121.82966 * 359.71869 * 18 17 6 20 20 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 25 25 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 27 27 H 1.08001 * 120.83349 * 0.03058 * 5 4 2 28 28 H 0.97002 * 119.99894 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47492 * 300.00042 * 8 7 6 30 30 H 1.09001 * 109.47029 * 60.00066 * 8 7 6 31 31 H 0.96999 * 120.00563 * 179.97438 * 12 11 9 32 32 H 1.08001 * 119.08204 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1673 -0.0293 -2.4245 6 6 2.6360 -0.7299 -3.5377 7 7 2.7883 -0.0918 -4.7579 8 6 2.4572 1.3293 -4.8878 9 6 2.7088 1.7763 -6.3048 10 1 3.0788 1.0723 -7.0354 11 6 2.4667 3.0840 -6.6685 12 7 2.0166 3.9415 -5.7786 13 14 2.7792 3.6383 -8.4247 14 1 1.9327 2.8454 -9.3521 15 1 2.4434 5.0788 -8.5564 16 1 4.2106 3.4313 -8.7618 17 7 2.9330 -2.0198 -3.4080 18 6 2.7888 -2.6297 -2.2491 19 7 2.3545 -1.9950 -1.1789 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9562 0.8901 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.9167 1.0188 -2.4954 28 1 3.1142 -0.5861 -5.5263 29 1 1.4067 1.4818 -4.6402 30 1 3.0789 1.9109 -4.2071 31 1 1.8465 4.8616 -6.0343 32 1 3.0381 -3.6778 -2.1729 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259444143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:03 Heat of formation + Delta-G solvation = 10.446521 kcal Electronic energy + Delta-G solvation = -14585.114946 eV Core-core repulsion = 12158.225922 eV Total energy + Delta-G solvation = -2426.889025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87016 -37.75840 -36.77680 -34.86164 -33.01191 -31.35944 -28.95213 -28.02939 -25.87756 -25.02348 -23.38507 -21.56118 -19.40230 -18.28008 -17.80527 -16.74756 -16.21530 -16.09379 -15.73975 -15.32476 -15.00250 -14.73025 -14.63200 -14.07290 -13.88633 -13.03983 -12.91882 -12.81973 -12.43581 -12.27032 -12.23934 -11.99861 -11.84910 -11.58895 -11.36816 -10.80547 -10.57276 -10.11323 -8.95671 -8.34499 -6.48809 0.18799 0.47308 1.41518 1.43622 1.51898 2.21045 2.43968 2.97982 3.02573 3.19462 3.51962 3.87318 4.09181 4.17262 4.25763 4.48111 4.66352 4.74885 4.81422 4.90681 4.94660 4.99432 5.14832 5.17292 5.33497 5.37810 5.41049 5.59909 5.76044 5.86796 6.45246 6.58251 6.85770 7.22320 7.40820 8.76610 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.006805 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.810828 B = 4113.417121 C = 4767.519992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.145 4.145 4 C 0.206 3.794 5 C -0.306 4.306 6 C 0.420 3.580 7 N -0.694 5.694 8 C 0.274 3.726 9 C -0.564 4.564 10 H 0.071 0.929 11 C 0.016 3.984 12 N -0.920 5.920 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.267 1.267 17 N -0.608 5.608 18 C 0.330 3.670 19 N -0.581 5.581 20 H 0.055 0.945 21 H 0.090 0.910 22 H 0.044 0.956 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.132 0.868 28 H 0.402 0.598 29 H 0.004 0.996 30 H 0.004 0.996 31 H 0.271 0.729 32 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -6.312 9.324 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.203 4.203 4 C 0.064 3.936 5 C -0.334 4.334 6 C 0.175 3.825 7 N -0.322 5.322 8 C 0.152 3.848 9 C -0.602 4.602 10 H 0.089 0.911 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.800 3.200 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.192 1.192 17 N -0.335 5.335 18 C 0.040 3.960 19 N -0.302 5.302 20 H 0.074 0.926 21 H 0.109 0.891 22 H 0.063 0.937 23 H 0.122 0.878 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.238 0.762 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.005 -6.787 9.374 11.617 hybrid contribution 0.096 1.154 -1.446 1.853 sum -0.909 -5.633 7.928 9.768 Atomic orbital electron populations 1.21760 0.92364 1.02228 1.02935 1.20167 0.97098 0.95528 0.93364 1.21896 1.00931 0.94429 1.02997 1.21733 0.88049 0.89557 0.94286 1.22062 1.13950 1.03070 0.94367 1.19009 0.87325 0.88794 0.87351 1.45122 1.67587 1.11603 1.07896 1.18769 0.94127 0.75021 0.96888 1.21486 1.46688 0.96538 0.95497 0.91104 1.25836 0.93927 0.96144 1.02590 1.70037 1.44435 1.05058 1.36285 0.85326 0.79064 0.77286 0.78316 1.19200 1.20440 1.19208 1.68010 1.26846 1.08734 1.29883 1.25284 0.88039 1.00978 0.81684 1.68282 1.19783 1.09635 1.32486 0.92606 0.89122 0.93703 0.87838 0.89176 0.93133 0.93447 0.85035 0.76241 0.97850 0.97801 0.91976 0.75698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.18 71.98 0.66 -2.40 16 2 C -0.04 -1.08 3.27 -11.54 -0.04 -1.12 16 3 C -0.14 -3.56 8.64 71.98 0.62 -2.94 16 4 C 0.21 6.86 5.82 42.42 0.25 7.10 16 5 C -0.31 -11.94 8.48 22.58 0.19 -11.75 16 6 C 0.42 17.50 7.71 133.16 1.03 18.52 16 7 N -0.69 -30.94 5.70 -348.32 -1.99 -32.93 16 8 C 0.27 14.04 4.68 85.63 0.40 14.44 16 9 C -0.56 -30.27 9.28 25.60 0.24 -30.03 16 10 H 0.07 3.62 7.60 -2.91 -0.02 3.60 16 11 C 0.02 0.85 5.46 84.65 0.46 1.32 16 12 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 13 Si 0.98 41.67 29.54 68.60 2.03 43.70 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 17 N -0.61 -22.96 10.47 -197.61 -2.07 -25.03 16 18 C 0.33 10.43 12.28 180.90 2.22 12.65 16 19 N -0.58 -19.01 10.37 -188.33 -1.95 -20.96 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.35 6.57 -2.39 -0.02 1.33 16 27 H 0.13 5.40 5.24 -2.91 -0.02 5.38 16 28 H 0.40 17.08 8.45 -92.71 -0.78 16.30 16 29 H 0.00 0.20 7.97 -2.39 -0.02 0.18 16 30 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 31 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.23 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -60.59 274.49 2.67 -57.92 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.34 Total: 23.16 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 6.03 Total: 5.80 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -5.72 Total: -130.58 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -60.59 2.67 -57.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259444143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.371 kcal (2) G-P(sol) polarization free energy of solvation -60.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds