Wall clock time and date at job start Sun Mar 29 2020 22:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47291 * 2 1 4 4 C 1.38122 * 120.40511 * 125.28346 * 3 2 1 5 5 C 1.39616 * 118.33519 * 180.19591 * 4 3 2 6 6 N 1.38545 * 120.53320 * 179.80425 * 5 4 3 7 7 C 1.46500 * 119.99801 * 359.71116 * 6 5 4 8 8 H 1.08997 * 109.47234 * 35.00329 * 7 6 5 9 9 C 1.53004 * 109.47254 * 275.00767 * 7 6 5 10 10 C 1.50692 * 109.47250 * 155.00702 * 7 6 5 11 11 H 1.08002 * 120.00435 * 95.27240 * 10 7 6 12 12 C 1.37885 * 119.99879 * 275.27560 * 10 7 6 13 13 N 1.31512 * 119.99754 * 5.45737 * 12 10 7 14 14 Si 1.86797 * 119.99878 * 185.45406 * 12 10 7 15 15 H 1.48499 * 109.46957 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47283 * 299.99916 * 14 12 10 17 17 H 1.48498 * 109.47355 * 60.00319 * 14 12 10 18 18 N 1.32994 * 118.93833 * 359.51978 * 5 4 3 19 19 C 1.31743 * 120.68663 * 0.25644 * 18 5 4 20 20 N 1.31795 * 121.83343 * 359.97438 * 19 18 5 21 21 H 1.09006 * 109.46856 * 59.99879 * 1 2 3 22 22 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47077 * 300.00560 * 1 2 3 24 24 H 1.09002 * 109.47077 * 239.99440 * 2 1 3 25 25 H 1.09009 * 109.46549 * 119.99700 * 2 1 3 26 26 H 1.08005 * 120.82953 * 359.96779 * 4 3 2 27 27 H 0.97000 * 120.00360 * 179.72115 * 6 5 4 28 28 H 1.08998 * 109.47207 * 55.04969 * 9 7 6 29 29 H 1.09000 * 109.47134 * 175.04842 * 9 7 6 30 30 H 1.09000 * 109.46661 * 295.04817 * 9 7 6 31 31 H 0.97001 * 120.00006 * 355.05886 * 13 12 10 32 32 H 1.08003 * 119.08702 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9141 1.8504 0.9724 5 6 3.3486 3.1767 0.9337 6 7 4.2297 3.6569 1.8889 7 6 4.7083 2.7726 2.9544 8 1 4.8224 1.7615 2.5636 9 6 3.6973 2.7643 4.1028 10 6 6.0384 3.2690 3.4596 11 1 6.0815 3.9078 4.3294 12 6 7.2005 2.9076 2.8114 13 7 7.1424 2.2198 1.6920 14 14 8.8573 3.3952 3.5232 15 1 9.9419 2.8892 2.6442 16 1 8.9416 4.8750 3.6125 17 1 9.0055 2.8082 4.8792 18 7 2.9074 3.9702 -0.0381 19 6 2.0699 3.5167 -0.9484 20 7 1.6378 2.2717 -0.9366 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.2561 1.1782 1.7456 27 1 4.5297 4.5786 1.8523 28 1 2.7145 2.4898 3.7198 29 1 4.0089 2.0406 4.8559 30 1 3.6485 3.7568 4.5509 31 1 6.2870 1.9050 1.3600 32 1 1.7279 4.1838 -1.7259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259597424.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:43 Heat of formation + Delta-G solvation = 7.802840 kcal Electronic energy + Delta-G solvation = -14869.001300 eV Core-core repulsion = 12441.997637 eV Total energy + Delta-G solvation = -2427.003664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78096 -38.22308 -35.94767 -34.66975 -32.76001 -31.47928 -30.32002 -26.83431 -25.49705 -25.13716 -23.01904 -21.94367 -19.63155 -18.51692 -17.72290 -16.47280 -16.07921 -15.91029 -15.69664 -15.48762 -15.21607 -14.84527 -14.54044 -13.98198 -13.32905 -13.12516 -12.94883 -12.63764 -12.45947 -12.40639 -12.11372 -11.96616 -11.60255 -11.47144 -10.79820 -10.76212 -10.59952 -10.06595 -8.87201 -8.73043 -6.59036 0.21030 0.54202 1.54623 1.58304 1.79772 2.32034 2.50787 3.03202 3.20900 3.30087 3.53113 3.93930 4.20719 4.29588 4.36191 4.41576 4.57031 4.64023 4.69607 4.77436 4.85799 4.99706 5.06034 5.17592 5.28096 5.37090 5.59738 5.71302 5.98468 6.06365 6.39379 6.63598 6.87324 7.29198 7.44857 8.60382 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.007260 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.677624 B = 3855.730844 C = 3978.570827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C 0.196 3.804 4 C -0.313 4.313 5 C 0.420 3.580 6 N -0.686 5.686 7 C 0.241 3.759 8 H 0.026 0.974 9 C -0.135 4.135 10 C -0.615 4.615 11 H 0.060 0.940 12 C -0.014 4.014 13 N -0.915 5.915 14 Si 1.117 2.883 15 H -0.289 1.289 16 H -0.272 1.272 17 H -0.264 1.264 18 N -0.618 5.618 19 C 0.327 3.673 20 N -0.582 5.582 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.390 0.610 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.260 0.740 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 -2.591 -0.716 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C 0.054 3.946 4 C -0.342 4.342 5 C 0.174 3.826 6 N -0.313 5.313 7 C 0.141 3.859 8 H 0.044 0.956 9 C -0.194 4.194 10 C -0.653 4.653 11 H 0.078 0.922 12 C -0.217 4.217 13 N -0.549 5.549 14 Si 0.938 3.062 15 H -0.215 1.215 16 H -0.197 1.197 17 H -0.189 1.189 18 N -0.346 5.346 19 C 0.037 3.963 20 N -0.304 5.304 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.149 0.851 27 H 0.225 0.775 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.811 -2.222 -1.458 8.250 hybrid contribution -1.033 0.095 0.770 1.292 sum -8.844 -2.126 -0.688 9.122 Atomic orbital electron populations 1.21583 0.92587 1.02902 1.01889 1.20607 0.98078 0.88183 1.04126 1.21798 0.88408 0.97144 0.87213 1.22048 1.08608 0.96561 1.06969 1.19278 0.86450 0.89754 0.87075 1.46574 1.43367 1.14882 1.26488 1.18940 0.92658 0.90165 0.84166 0.95635 1.21976 0.97507 1.01402 0.98465 1.22382 0.91876 1.35300 1.15757 0.92178 1.27409 1.07401 0.93436 0.93436 1.70912 1.29483 1.35089 1.19445 0.82927 0.70729 0.76883 0.75655 1.21464 1.19686 1.18902 1.68050 1.19583 1.39586 1.07342 1.25197 0.86904 0.90724 0.93451 1.68234 1.30344 1.04724 1.27073 0.92255 0.89843 0.93705 0.88836 0.89383 0.85061 0.77545 0.94031 0.91679 0.93362 0.92942 0.76314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.78 71.98 0.70 -2.15 16 2 C -0.07 -1.86 6.36 29.85 0.19 -1.67 16 3 C 0.20 6.80 6.20 42.42 0.26 7.07 16 4 C -0.31 -12.52 8.58 22.58 0.19 -12.33 16 5 C 0.42 18.38 7.69 133.16 1.02 19.40 16 6 N -0.69 -31.54 5.22 -327.64 -1.71 -33.25 16 7 C 0.24 11.34 1.83 44.24 0.08 11.42 16 8 H 0.03 1.32 5.31 -2.39 -0.01 1.30 16 9 C -0.13 -5.33 9.44 71.98 0.68 -4.65 16 10 C -0.61 -31.61 8.50 25.60 0.22 -31.39 16 11 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 12 C -0.01 -0.74 5.45 84.66 0.46 -0.28 16 13 N -0.91 -53.16 13.63 21.45 0.29 -52.87 16 14 Si 1.12 46.86 29.91 68.60 2.05 48.91 16 15 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 18 N -0.62 -25.53 10.47 -197.62 -2.07 -27.60 16 19 C 0.33 11.40 12.28 180.90 2.22 13.63 16 20 N -0.58 -20.27 10.03 -188.34 -1.89 -22.16 16 21 H 0.06 1.37 7.98 -2.38 -0.02 1.35 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.09 2.08 7.93 -2.38 -0.02 2.06 16 26 H 0.13 5.23 6.30 -2.91 -0.02 5.21 16 27 H 0.39 18.31 8.72 -92.71 -0.81 17.50 16 28 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.26 15.48 6.78 -92.71 -0.63 14.85 16 32 H 0.22 5.66 8.06 -2.91 -0.02 5.64 16 Total: -1.00 -61.10 274.12 3.16 -57.94 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.45 Total: 29.98 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.04 Total: -0.96 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -5.38 Total: -135.87 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.05 Total: 48.91 kcal Total: -61.10 3.16 -57.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597424.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.741 kcal (2) G-P(sol) polarization free energy of solvation -61.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds