Wall clock time and date at job start Sun Mar 29 2020 22:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 C 1.38118 * 120.40610 * 125.01884 * 3 2 1 5 5 C 1.39623 * 118.33801 * 179.97438 * 4 3 2 6 6 N 1.38536 * 120.53176 * 180.29528 * 5 4 3 7 7 C 1.46504 * 120.00120 * 359.72569 * 6 5 4 8 8 H 1.08994 * 109.46904 * 324.99823 * 7 6 5 9 9 C 1.53000 * 109.46924 * 84.99785 * 7 6 5 10 10 C 1.50704 * 109.47139 * 204.99824 * 7 6 5 11 11 H 1.08000 * 120.00027 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99684 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00242 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99615 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47072 * 59.99941 * 14 12 10 16 16 H 1.48493 * 109.46757 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46912 * 299.99821 * 14 12 10 18 18 N 1.32994 * 118.93308 * 0.02635 * 5 4 3 19 19 C 1.31740 * 120.68799 * 359.97438 * 18 5 4 20 20 N 1.31787 * 121.83817 * 359.97438 * 19 18 5 21 21 H 1.09005 * 109.47091 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.46682 * 60.00247 * 1 2 3 23 23 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47706 * 239.99573 * 2 1 3 25 25 H 1.09006 * 109.46965 * 119.99382 * 2 1 3 26 26 H 1.08002 * 120.82959 * 359.97438 * 4 3 2 27 27 H 0.97004 * 120.00167 * 179.72193 * 6 5 4 28 28 H 1.09002 * 109.47113 * 60.00572 * 9 7 6 29 29 H 1.09003 * 109.46669 * 179.97438 * 9 7 6 30 30 H 1.08995 * 109.47437 * 299.99970 * 9 7 6 31 31 H 0.96996 * 119.99951 * 179.97438 * 13 12 10 32 32 H 1.08003 * 119.08584 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9098 1.8521 0.9756 5 6 3.3481 3.1771 0.9340 6 7 4.2331 3.6559 1.8862 7 6 4.7120 2.7715 2.9515 8 1 3.9153 2.0861 3.2403 9 6 5.9152 1.9717 2.4479 10 6 5.1212 3.5972 4.1440 11 1 5.0336 4.6731 4.1114 12 6 5.6082 2.9790 5.2761 13 7 5.7153 1.6688 5.3155 14 14 6.1147 4.0025 6.7544 15 1 4.9463 4.7778 7.2434 16 1 6.6003 3.1061 7.8341 17 1 7.1995 4.9372 6.3611 18 7 2.9065 3.9706 -0.0376 19 6 2.0694 3.5169 -0.9481 20 7 1.6381 2.2717 -0.9369 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.2485 1.1811 1.7512 27 1 4.5357 4.5767 1.8477 28 1 6.7120 2.6572 2.1591 29 1 6.2718 1.3141 3.2406 30 1 5.6194 1.3745 1.5855 31 1 6.0584 1.2340 6.1118 32 1 1.7276 4.1838 -1.7259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259597427.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:46 Heat of formation + Delta-G solvation = 31.720936 kcal Electronic energy + Delta-G solvation = -14704.175953 eV Core-core repulsion = 12278.209456 eV Total energy + Delta-G solvation = -2425.966497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33762 -36.41653 -34.55997 -33.02484 -31.14131 -29.98791 -28.38141 -25.42643 -24.25263 -23.61606 -21.36669 -20.20124 -17.87858 -16.34595 -16.19451 -14.93474 -14.78286 -14.62379 -14.33559 -13.81565 -13.50640 -13.27120 -12.54577 -12.38626 -11.94897 -11.38824 -11.34808 -11.14349 -11.00004 -10.93538 -10.54677 -10.33264 -10.19047 -9.99969 -9.21839 -9.18395 -8.63226 -8.60901 -7.25977 -6.26995 -4.35704 1.63163 2.01782 3.19706 3.24650 3.26661 3.90638 4.28406 4.46296 4.57478 4.86001 5.06431 5.30208 5.41433 5.47428 5.63451 5.90378 6.00099 6.07432 6.15800 6.31999 6.40635 6.55775 6.76077 6.84590 6.94064 7.26067 7.44712 7.54818 7.69796 7.93177 8.17452 8.47953 8.68713 8.92502 9.32116 10.79292 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039091 B = 0.006831 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.108224 B = 4098.163912 C = 4465.893819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C 0.191 3.809 4 C -0.289 4.289 5 C 0.442 3.558 6 N -0.683 5.683 7 C 0.267 3.733 8 H 0.045 0.955 9 C -0.153 4.153 10 C -0.535 4.535 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.886 5.886 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.600 5.600 19 C 0.330 3.670 20 N -0.581 5.581 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.142 0.858 27 H 0.398 0.602 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.014 0.986 31 H 0.267 0.733 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -1.974 -7.320 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C 0.051 3.949 4 C -0.318 4.318 5 C 0.196 3.804 6 N -0.309 5.309 7 C 0.165 3.835 8 H 0.062 0.938 9 C -0.212 4.212 10 C -0.573 4.573 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.200 1.200 18 N -0.327 5.327 19 C 0.040 3.960 20 N -0.303 5.303 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.160 0.840 27 H 0.233 0.767 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.548 -1.702 -7.641 9.595 hybrid contribution 0.815 0.424 1.481 1.742 sum -4.733 -1.278 -6.160 7.873 Atomic orbital electron populations 1.21628 0.94239 1.01301 1.02593 1.20457 0.96830 0.90614 1.03069 1.21188 0.89668 0.95526 0.88503 1.22091 1.07154 0.97356 1.05230 1.18793 0.86229 0.88805 0.86579 1.45537 1.43554 1.15328 1.26433 1.18908 0.92770 0.88983 0.82803 0.93778 1.22201 0.99193 1.00152 0.99678 1.21124 1.44547 0.93569 0.98055 0.91874 1.24863 0.94894 0.95131 0.98628 1.69851 1.45144 1.08028 1.29286 0.86440 0.79045 0.79838 0.81463 1.20075 1.21006 1.20033 1.67967 1.18921 1.38950 1.06855 1.24375 0.88081 0.90093 0.93495 1.68090 1.30049 1.04631 1.27548 0.92973 0.91642 0.92603 0.90102 0.90227 0.84000 0.76725 0.94901 0.88716 0.96731 0.92329 0.79933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.78 37.16 0.36 -1.32 16 2 C -0.07 -0.96 6.36 -27.88 -0.18 -1.14 16 3 C 0.19 3.29 6.20 -82.32 -0.51 2.78 16 4 C -0.29 -5.58 8.54 -39.11 -0.33 -5.92 16 5 C 0.44 9.08 7.69 -154.78 -1.19 7.89 16 6 N -0.68 -14.63 5.22 -54.91 -0.29 -14.92 16 7 C 0.27 6.35 2.26 -69.08 -0.16 6.20 16 8 H 0.04 1.13 6.52 -51.93 -0.34 0.79 16 9 C -0.15 -3.53 9.22 37.16 0.34 -3.19 16 10 C -0.53 -13.76 8.73 -34.44 -0.30 -14.06 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 13 N -0.89 -23.55 11.32 55.43 0.63 -22.92 16 14 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 N -0.60 -11.56 10.47 -13.82 -0.14 -11.70 16 19 C 0.33 5.56 12.28 -92.21 -1.13 4.43 16 20 N -0.58 -9.99 10.03 -10.88 -0.11 -10.10 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.82 7.98 -51.93 -0.41 0.40 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.08 1.01 7.93 -51.93 -0.41 0.59 16 26 H 0.14 2.78 6.24 -52.49 -0.33 2.45 16 27 H 0.40 8.22 8.66 -40.82 -0.35 7.87 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.01 0.30 7.73 -51.93 -0.40 -0.10 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 32 H 0.18 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -27.29 272.08 -8.24 -35.53 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.22 Total: 7.54 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -3.19 Total: -2.67 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.09 Total: -59.65 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.29 -8.24 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597427.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.247 kcal (2) G-P(sol) polarization free energy of solvation -27.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds