Wall clock time and date at job start Sun Mar 29 2020 22:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 C 1.38118 * 120.40610 * 125.01884 * 3 2 1 5 5 C 1.39623 * 118.33801 * 179.97438 * 4 3 2 6 6 N 1.38536 * 120.53176 * 180.29528 * 5 4 3 7 7 C 1.46504 * 120.00120 * 359.72569 * 6 5 4 8 8 H 1.08994 * 109.46904 * 324.99823 * 7 6 5 9 9 C 1.53000 * 109.46924 * 84.99785 * 7 6 5 10 10 C 1.50704 * 109.47139 * 204.99824 * 7 6 5 11 11 H 1.08000 * 120.00027 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99684 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00242 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99615 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47072 * 59.99941 * 14 12 10 16 16 H 1.48493 * 109.46757 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46912 * 299.99821 * 14 12 10 18 18 N 1.32994 * 118.93308 * 0.02635 * 5 4 3 19 19 C 1.31740 * 120.68799 * 359.97438 * 18 5 4 20 20 N 1.31787 * 121.83817 * 359.97438 * 19 18 5 21 21 H 1.09005 * 109.47091 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.46682 * 60.00247 * 1 2 3 23 23 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47706 * 239.99573 * 2 1 3 25 25 H 1.09006 * 109.46965 * 119.99382 * 2 1 3 26 26 H 1.08002 * 120.82959 * 359.97438 * 4 3 2 27 27 H 0.97004 * 120.00167 * 179.72193 * 6 5 4 28 28 H 1.09002 * 109.47113 * 60.00572 * 9 7 6 29 29 H 1.09003 * 109.46669 * 179.97438 * 9 7 6 30 30 H 1.08995 * 109.47437 * 299.99970 * 9 7 6 31 31 H 0.96996 * 119.99951 * 179.97438 * 13 12 10 32 32 H 1.08003 * 119.08584 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9098 1.8521 0.9756 5 6 3.3481 3.1771 0.9340 6 7 4.2331 3.6559 1.8862 7 6 4.7120 2.7715 2.9515 8 1 3.9153 2.0861 3.2403 9 6 5.9152 1.9717 2.4479 10 6 5.1212 3.5972 4.1440 11 1 5.0336 4.6731 4.1114 12 6 5.6082 2.9790 5.2761 13 7 5.7153 1.6688 5.3155 14 14 6.1147 4.0025 6.7544 15 1 4.9463 4.7778 7.2434 16 1 6.6003 3.1061 7.8341 17 1 7.1995 4.9372 6.3611 18 7 2.9065 3.9706 -0.0376 19 6 2.0694 3.5169 -0.9481 20 7 1.6381 2.2717 -0.9369 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.2485 1.1811 1.7512 27 1 4.5357 4.5767 1.8477 28 1 6.7120 2.6572 2.1591 29 1 6.2718 1.3141 3.2406 30 1 5.6194 1.3745 1.5855 31 1 6.0584 1.2340 6.1118 32 1 1.7276 4.1838 -1.7259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259597427.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:46 Heat of formation + Delta-G solvation = 16.771166 kcal Electronic energy + Delta-G solvation = -14704.824223 eV Core-core repulsion = 12278.209456 eV Total energy + Delta-G solvation = -2426.614768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77813 -38.09342 -35.91703 -34.77525 -32.66588 -31.38412 -30.09203 -27.37426 -25.50450 -25.08906 -22.89287 -21.79492 -19.51136 -17.98586 -17.81743 -16.75051 -16.28041 -15.97938 -15.76348 -15.41408 -14.78604 -14.53736 -14.33471 -14.03024 -13.32080 -13.08422 -12.95351 -12.77521 -12.39615 -12.37689 -12.18525 -12.04630 -11.74786 -11.50365 -11.13263 -10.66582 -10.53222 -10.05717 -8.88428 -8.23419 -6.38947 0.22802 0.52859 1.43647 1.43853 1.51945 2.24839 2.48332 3.03118 3.08547 3.32707 3.55243 3.92635 4.24165 4.33757 4.44348 4.57997 4.67240 4.79788 4.89923 4.90780 4.99622 5.07573 5.20482 5.28644 5.40602 5.52890 5.63933 5.79077 5.88437 6.05817 6.51289 6.66931 6.91588 7.30981 7.46175 8.82105 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039091 B = 0.006831 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.108224 B = 4098.163912 C = 4465.893819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C 0.198 3.802 4 C -0.311 4.311 5 C 0.426 3.574 6 N -0.690 5.690 7 C 0.278 3.722 8 H 0.021 0.979 9 C -0.139 4.139 10 C -0.554 4.554 11 H 0.062 0.938 12 C 0.025 3.975 13 N -0.909 5.909 14 Si 0.966 3.034 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.270 1.270 18 N -0.612 5.612 19 C 0.329 3.671 20 N -0.579 5.579 21 H 0.040 0.960 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.399 0.601 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.269 0.731 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -1.973 -8.050 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C 0.057 3.943 4 C -0.339 4.339 5 C 0.181 3.819 6 N -0.317 5.317 7 C 0.175 3.825 8 H 0.039 0.961 9 C -0.198 4.198 10 C -0.592 4.592 11 H 0.080 0.920 12 C -0.176 4.176 13 N -0.547 5.547 14 Si 0.791 3.209 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.195 1.195 18 N -0.339 5.339 19 C 0.040 3.960 20 N -0.301 5.301 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.149 0.851 27 H 0.234 0.766 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.256 -1.695 -8.404 10.613 hybrid contribution 0.942 0.396 1.597 1.896 sum -5.314 -1.300 -6.807 8.733 Atomic orbital electron populations 1.21596 0.92875 1.02873 1.01820 1.20614 0.97874 0.88348 1.04246 1.21769 0.88183 0.97141 0.87254 1.22137 1.08650 0.96990 1.06155 1.18979 0.86447 0.89532 0.86896 1.45257 1.44682 1.15057 1.26688 1.18578 0.92073 0.88729 0.83155 0.96107 1.22012 0.98828 0.99717 0.99286 1.21428 1.44849 0.93785 0.99146 0.92030 1.25614 0.94825 0.96138 1.01048 1.69956 1.45545 1.09227 1.29949 0.85484 0.78657 0.78422 0.78326 1.19919 1.20555 1.19495 1.68014 1.19682 1.39103 1.07092 1.25240 0.86775 0.90614 0.93383 1.68241 1.29768 1.04805 1.27252 0.94078 0.92002 0.89932 0.88298 0.89630 0.85051 0.76596 0.95075 0.90629 0.95621 0.92218 0.75952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.78 71.98 0.70 -2.20 16 2 C -0.07 -1.81 6.36 29.85 0.19 -1.62 16 3 C 0.20 6.53 6.20 42.42 0.26 6.79 16 4 C -0.31 -11.98 8.54 22.58 0.19 -11.79 16 5 C 0.43 17.50 7.69 133.16 1.02 18.52 16 6 N -0.69 -29.99 5.22 -327.63 -1.71 -31.70 16 7 C 0.28 13.48 2.26 44.25 0.10 13.58 16 8 H 0.02 1.11 6.52 -2.39 -0.02 1.10 16 9 C -0.14 -6.53 9.22 71.98 0.66 -5.87 16 10 C -0.55 -28.85 8.73 25.60 0.22 -28.62 16 11 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 12 C 0.02 1.29 5.30 84.66 0.45 1.74 16 13 N -0.91 -48.81 11.32 21.45 0.24 -48.57 16 14 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 N -0.61 -22.97 10.47 -197.62 -2.07 -25.03 16 19 C 0.33 10.39 12.28 180.90 2.22 12.61 16 20 N -0.58 -18.71 10.03 -188.34 -1.89 -20.60 16 21 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 22 H 0.06 1.39 7.98 -2.39 -0.02 1.37 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.09 2.03 7.93 -2.38 -0.02 2.01 16 26 H 0.13 5.29 6.24 -2.91 -0.02 5.27 16 27 H 0.40 16.74 8.66 -92.71 -0.80 15.93 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 3.84 6.07 -2.39 -0.01 3.82 16 30 H 0.02 1.09 7.73 -2.39 -0.02 1.07 16 31 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.22 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -57.42 272.08 2.95 -54.47 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.32 Total: 25.03 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.03 Total: 3.14 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -5.43 Total: -125.90 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -57.42 2.95 -54.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597427.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.243 kcal (2) G-P(sol) polarization free energy of solvation -57.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds