Wall clock time and date at job start Sun Mar 29 2020 21:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47111 * 2 1 4 4 C 1.50703 * 109.46952 * 240.00755 * 2 1 3 5 5 H 1.07994 * 119.99713 * 239.99367 * 4 2 1 6 6 C 1.37877 * 119.99781 * 59.99765 * 4 2 1 7 7 N 1.31511 * 120.00510 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99838 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47171 * 89.99631 * 8 6 4 10 10 H 1.48501 * 109.47136 * 210.00143 * 8 6 4 11 11 H 1.48507 * 109.46963 * 329.99822 * 8 6 4 12 12 N 1.46493 * 109.47409 * 120.00371 * 2 1 3 13 13 C 1.34776 * 120.00481 * 274.99865 * 12 2 1 14 14 O 1.21480 * 119.99693 * 0.02562 * 13 12 2 15 15 C 1.48451 * 120.00018 * 180.02562 * 13 12 2 16 16 C 1.39539 * 120.54608 * 180.02562 * 15 13 12 17 17 C 1.38768 * 118.26218 * 179.70005 * 16 15 13 18 18 N 1.32198 * 119.14750 * 0.27856 * 17 16 15 19 19 C 1.31889 * 121.03445 * 359.97438 * 18 17 16 20 20 N 1.31572 * 121.91994 * 0.02562 * 19 18 17 21 21 H 1.09004 * 109.46821 * 299.99393 * 1 2 3 22 22 H 1.08999 * 109.47503 * 59.99515 * 1 2 3 23 23 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00056 * 179.97438 * 7 6 4 25 25 H 0.97008 * 119.99470 * 95.00157 * 12 2 1 26 26 H 1.08002 * 120.87229 * 359.97438 * 16 15 13 27 27 H 1.07995 * 120.42403 * 180.29725 * 17 16 15 28 28 H 1.08006 * 119.03578 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2390 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3223 -1.1190 -4.0082 9 1 1.3447 -2.1611 -4.4126 10 1 2.4870 -0.1395 -5.1121 11 1 3.6308 -1.7560 -3.7123 12 7 2.0183 -0.6906 1.1960 13 6 2.1472 -0.0185 2.3571 14 8 1.8578 1.1601 2.4119 15 6 2.6426 -0.7183 3.5689 16 6 2.7799 -0.0336 4.7770 17 6 3.2412 -0.7357 5.8815 18 7 3.5380 -2.0174 5.7517 19 6 3.4014 -2.6331 4.5934 20 7 2.9677 -2.0078 3.5201 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7085 1.1616 -3.4843 25 1 2.2491 -1.6319 1.1523 26 1 2.5293 1.0143 4.8516 27 1 3.3560 -0.2414 6.8348 28 1 3.6530 -3.6811 4.5240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259605581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:33 Heat of formation + Delta-G solvation = 8.912912 kcal Electronic energy + Delta-G solvation = -14317.908249 eV Core-core repulsion = 11755.119628 eV Total energy + Delta-G solvation = -2562.788622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06854 -38.69598 -34.94747 -33.88291 -32.32559 -32.03686 -29.02502 -25.43565 -25.18825 -24.33632 -21.60675 -19.78899 -18.37012 -17.52229 -16.27813 -15.44365 -15.28074 -15.09270 -15.06931 -14.25330 -13.83510 -13.70735 -13.09145 -12.45001 -11.77663 -11.14687 -11.01032 -10.99085 -10.85464 -10.72986 -10.37934 -10.26054 -9.83684 -9.75320 -9.16358 -9.06576 -8.59261 -8.01945 -6.14873 -4.24145 0.59660 0.89154 3.17896 3.24478 3.31005 3.33637 3.61311 3.99693 4.04195 4.11122 4.33849 4.79251 4.96946 5.11105 5.18027 5.48939 5.72873 6.23673 6.76322 6.79096 6.91120 7.07905 7.32178 7.48618 7.65757 7.83789 7.94019 8.09370 8.55168 8.69955 8.95942 9.42920 10.91265 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.006524 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.429119 B = 4290.652285 C = 4674.196908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.549 3.451 14 O -0.541 6.541 15 C 0.144 3.856 16 C -0.176 4.176 17 C 0.144 3.856 18 N -0.517 5.517 19 C 0.289 3.711 20 N -0.495 5.495 21 H 0.015 0.985 22 H 0.093 0.907 23 H 0.028 0.972 24 H 0.265 0.735 25 H 0.401 0.599 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -4.598 12.283 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.324 5.324 13 C 0.330 3.670 14 O -0.418 6.418 15 C -0.004 4.004 16 C -0.199 4.199 17 C -0.023 4.023 18 N -0.231 5.231 19 C 0.001 3.999 20 N -0.212 5.212 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.236 0.764 26 H 0.177 0.823 27 H 0.190 0.810 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.192 -4.572 12.000 13.232 hybrid contribution 0.204 -0.081 -0.750 0.782 sum 3.396 -4.653 11.249 12.639 Atomic orbital electron populations 1.22087 0.98044 0.99397 1.01083 1.18909 0.91326 0.94109 0.79734 0.93014 1.21204 1.32595 1.13357 0.90116 0.91836 1.24883 0.94760 0.94932 0.99080 1.69896 1.35838 1.22415 1.23985 0.86411 0.79237 0.79248 0.82005 1.20484 1.21053 1.19784 1.46507 1.61897 1.14380 1.09609 1.17845 0.79899 0.86391 0.82850 1.90754 1.51687 1.14957 1.84427 1.22188 0.92895 0.90045 0.95276 1.23023 0.99663 1.03738 0.93462 1.23290 0.90515 0.89736 0.98727 1.68335 1.16212 1.10881 1.27709 1.24979 0.91277 1.00725 0.82941 1.68420 1.10976 1.09225 1.32530 0.96570 0.88851 0.95239 0.92507 0.76438 0.82267 0.80971 0.78365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 15 2 C 0.26 6.68 2.56 -69.09 -0.18 6.50 15 3 H 0.05 1.50 7.58 -51.92 -0.39 1.11 15 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 15 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 15 7 N -0.88 -24.75 11.32 55.43 0.63 -24.12 15 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 12 N -0.68 -14.78 5.06 -55.69 -0.28 -15.06 15 13 C 0.55 11.38 7.79 -12.05 -0.09 11.29 15 14 O -0.54 -12.68 16.09 5.38 0.09 -12.59 15 15 C 0.14 2.40 6.79 -82.64 -0.56 1.84 15 16 C -0.18 -2.36 9.72 -38.90 -0.38 -2.74 15 17 C 0.14 1.58 11.31 -17.20 -0.19 1.39 15 18 N -0.52 -6.31 10.42 -14.60 -0.15 -6.46 15 19 C 0.29 3.58 12.27 -92.26 -1.13 2.45 15 20 N -0.50 -7.56 9.70 -11.14 -0.11 -7.67 15 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 22 H 0.09 2.50 6.07 -51.93 -0.32 2.19 15 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.26 7.02 8.31 -40.82 -0.34 6.69 15 25 H 0.40 8.06 7.93 -40.82 -0.32 7.73 15 26 H 0.16 1.98 7.74 -52.49 -0.41 1.57 15 27 H 0.17 1.19 8.06 -52.49 -0.42 0.77 15 28 H 0.20 1.73 8.06 -52.48 -0.42 1.30 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -30.58 254.95 -6.27 -36.84 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.67 Total: 5.05 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.59 Total: 4.54 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.09 Total: -53.32 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.58 -6.27 -36.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.754 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds