Wall clock time and date at job start Sun Mar 29 2020 21:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47111 * 2 1 4 4 C 1.50703 * 109.46952 * 240.00755 * 2 1 3 5 5 H 1.07994 * 119.99713 * 239.99367 * 4 2 1 6 6 C 1.37877 * 119.99781 * 59.99765 * 4 2 1 7 7 N 1.31511 * 120.00510 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99838 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47171 * 89.99631 * 8 6 4 10 10 H 1.48501 * 109.47136 * 210.00143 * 8 6 4 11 11 H 1.48507 * 109.46963 * 329.99822 * 8 6 4 12 12 N 1.46493 * 109.47409 * 120.00371 * 2 1 3 13 13 C 1.34776 * 120.00481 * 274.99865 * 12 2 1 14 14 O 1.21480 * 119.99693 * 0.02562 * 13 12 2 15 15 C 1.48451 * 120.00018 * 180.02562 * 13 12 2 16 16 C 1.39539 * 120.54608 * 180.02562 * 15 13 12 17 17 C 1.38768 * 118.26218 * 179.70005 * 16 15 13 18 18 N 1.32198 * 119.14750 * 0.27856 * 17 16 15 19 19 C 1.31889 * 121.03445 * 359.97438 * 18 17 16 20 20 N 1.31572 * 121.91994 * 0.02562 * 19 18 17 21 21 H 1.09004 * 109.46821 * 299.99393 * 1 2 3 22 22 H 1.08999 * 109.47503 * 59.99515 * 1 2 3 23 23 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00056 * 179.97438 * 7 6 4 25 25 H 0.97008 * 119.99470 * 95.00157 * 12 2 1 26 26 H 1.08002 * 120.87229 * 359.97438 * 16 15 13 27 27 H 1.07995 * 120.42403 * 180.29725 * 17 16 15 28 28 H 1.08006 * 119.03578 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2390 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3223 -1.1190 -4.0082 9 1 1.3447 -2.1611 -4.4126 10 1 2.4870 -0.1395 -5.1121 11 1 3.6308 -1.7560 -3.7123 12 7 2.0183 -0.6906 1.1960 13 6 2.1472 -0.0185 2.3571 14 8 1.8578 1.1601 2.4119 15 6 2.6426 -0.7183 3.5689 16 6 2.7799 -0.0336 4.7770 17 6 3.2412 -0.7357 5.8815 18 7 3.5380 -2.0174 5.7517 19 6 3.4014 -2.6331 4.5934 20 7 2.9677 -2.0078 3.5201 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7085 1.1616 -3.4843 25 1 2.2491 -1.6319 1.1523 26 1 2.5293 1.0143 4.8516 27 1 3.3560 -0.2414 6.8348 28 1 3.6530 -3.6811 4.5240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259605581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:33 Heat of formation + Delta-G solvation = -12.464193 kcal Electronic energy + Delta-G solvation = -14318.835230 eV Core-core repulsion = 11755.119628 eV Total energy + Delta-G solvation = -2563.715603 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17741 -40.33036 -36.85995 -35.06431 -34.20271 -33.11053 -30.93587 -27.39272 -26.60714 -25.34786 -23.28871 -21.54686 -19.92988 -18.61762 -18.06970 -17.10794 -16.57519 -16.45240 -16.42321 -15.91113 -15.29483 -14.84487 -14.56997 -14.44423 -13.75875 -13.05844 -12.92074 -12.76288 -12.32989 -12.16894 -12.01448 -11.88644 -11.39643 -11.15646 -10.81220 -10.63560 -10.35885 -9.88546 -8.20224 -6.37865 -0.57957 -0.05962 1.44839 1.45462 1.56321 1.75508 2.12588 2.43100 2.81692 2.96601 3.10314 3.19875 3.64228 3.80583 4.05329 4.56535 4.64059 4.73307 4.87643 5.02457 5.28007 5.34837 5.50634 5.60838 5.73899 5.86444 6.03974 6.66752 6.72262 6.96012 7.20002 7.37138 8.86263 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.006524 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.429119 B = 4290.652285 C = 4674.196908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.266 3.734 3 H 0.008 0.992 4 C -0.551 4.551 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.679 5.679 13 C 0.547 3.453 14 O -0.576 6.576 15 C 0.118 3.882 16 C -0.174 4.174 17 C 0.164 3.836 18 N -0.516 5.516 19 C 0.291 3.709 20 N -0.514 5.514 21 H 0.015 0.985 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.267 0.733 25 H 0.410 0.590 26 H 0.166 0.834 27 H 0.220 0.780 28 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -6.211 13.596 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.190 1.190 12 N -0.327 5.327 13 C 0.331 3.669 14 O -0.456 6.456 15 C -0.029 4.029 16 C -0.197 4.197 17 C -0.003 4.003 18 N -0.230 5.230 19 C 0.003 3.997 20 N -0.231 5.231 21 H 0.034 0.966 22 H 0.091 0.909 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.246 0.754 26 H 0.183 0.817 27 H 0.237 0.763 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.167 -6.217 13.329 15.287 hybrid contribution -0.068 0.431 -1.020 1.109 sum 4.100 -5.786 12.310 14.206 Atomic orbital electron populations 1.21907 0.97750 0.99618 1.00007 1.18539 0.91542 0.92201 0.81368 0.97454 1.21495 1.32931 1.13681 0.90753 0.91138 1.25779 0.94765 0.95549 1.02217 1.70031 1.36749 1.23737 1.24799 0.85313 0.78940 0.78075 0.77821 1.19544 1.20941 1.19015 1.46263 1.62538 1.14660 1.09224 1.18431 0.78684 0.86105 0.83662 1.90717 1.53003 1.16616 1.85275 1.21574 0.95785 0.91157 0.94360 1.23197 0.99364 1.04152 0.92967 1.24012 0.87796 0.89100 0.99416 1.68481 1.15847 1.11363 1.27351 1.25677 0.89924 1.01926 0.82160 1.68345 1.11974 1.08675 1.34148 0.96553 0.90909 0.94186 0.92350 0.75416 0.81680 0.76322 0.74995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 15 2 C 0.27 14.13 2.56 44.25 0.11 14.24 15 3 H 0.01 0.46 7.58 -2.38 -0.02 0.45 15 4 C -0.55 -29.75 8.73 25.60 0.22 -29.53 15 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 15 6 C 0.02 0.93 5.30 84.66 0.45 1.38 15 7 N -0.92 -52.30 11.32 21.45 0.24 -52.06 15 8 Si 0.97 42.23 29.54 68.60 2.03 44.26 15 9 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 12 N -0.68 -30.37 5.06 -448.40 -2.27 -32.64 15 13 C 0.55 23.23 7.79 86.97 0.68 23.91 15 14 O -0.58 -28.02 16.09 -3.65 -0.06 -28.08 15 15 C 0.12 3.85 6.79 41.99 0.29 4.13 15 16 C -0.17 -4.35 9.72 22.71 0.22 -4.13 15 17 C 0.16 3.00 11.31 84.76 0.96 3.96 15 18 N -0.52 -10.74 10.42 -200.09 -2.09 -12.82 15 19 C 0.29 6.38 12.27 180.92 2.22 8.60 15 20 N -0.51 -15.00 9.70 -189.15 -1.84 -16.83 15 21 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.07 4.03 6.07 -2.39 -0.01 4.02 15 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.27 14.39 8.31 -92.71 -0.77 13.61 15 25 H 0.41 16.65 7.93 -92.70 -0.73 15.91 15 26 H 0.17 3.88 7.74 -2.91 -0.02 3.86 15 27 H 0.22 1.87 8.06 -2.91 -0.02 1.84 15 28 H 0.23 3.22 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -67.43 254.95 2.29 -65.14 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.45 Total: 16.67 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.82 Total: 16.36 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.95 Total: -114.35 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.43 2.29 -65.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.679 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds