Wall clock time and date at job start Sun Mar 29 2020 21:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47197 * 2 1 4 4 C 1.50699 * 109.46970 * 119.99571 * 2 1 3 5 5 H 1.07998 * 119.99837 * 120.00373 * 4 2 1 6 6 C 1.37874 * 120.00205 * 300.00195 * 4 2 1 7 7 N 1.31521 * 119.99733 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00268 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46962 * 89.99538 * 8 6 4 10 10 H 1.48491 * 109.47433 * 209.99963 * 8 6 4 11 11 H 1.48505 * 109.46888 * 330.00487 * 8 6 4 12 12 N 1.46500 * 109.47246 * 239.99988 * 2 1 3 13 13 C 1.34772 * 119.99979 * 84.99943 * 12 2 1 14 14 O 1.21477 * 120.00242 * 0.02562 * 13 12 2 15 15 C 1.48460 * 119.99988 * 179.97438 * 13 12 2 16 16 C 1.39531 * 120.54897 * 180.02562 * 15 13 12 17 17 C 1.38767 * 118.26048 * 179.97438 * 16 15 13 18 18 N 1.32197 * 119.14738 * 0.02562 * 17 16 15 19 19 C 1.31888 * 121.03994 * 359.97438 * 18 17 16 20 20 N 1.31584 * 121.91236 * 0.02562 * 19 18 17 21 21 H 1.08998 * 109.47354 * 299.99807 * 1 2 3 22 22 H 1.08999 * 109.47156 * 60.00270 * 1 2 3 23 23 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 24 24 H 0.97006 * 119.99734 * 180.02562 * 7 6 4 25 25 H 0.97000 * 119.99569 * 264.99492 * 12 2 1 26 26 H 1.07998 * 120.86993 * 359.97438 * 16 15 13 27 27 H 1.07998 * 120.42266 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.04225 * 180.28788 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9771 1.9954 3.9070 11 1 0.8491 2.1774 1.4922 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8586 1.1605 -2.4116 15 6 2.6425 -0.7180 -3.5691 16 6 2.7807 -0.0329 -4.7768 17 6 3.2485 -0.7333 -5.8797 18 7 3.5445 -2.0152 -5.7502 19 6 3.4021 -2.6326 -4.5935 20 7 2.9622 -2.0089 -3.5216 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9034 -0.5277 4.4376 25 1 2.2491 -1.6317 -1.1525 26 1 2.5302 1.0149 -4.8513 27 1 3.3684 -0.2377 -6.8317 28 1 3.6580 -3.6794 -4.5230 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259605583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:35 Heat of formation + Delta-G solvation = -5.893667 kcal Electronic energy + Delta-G solvation = -14377.957033 eV Core-core repulsion = 11814.526350 eV Total energy + Delta-G solvation = -2563.430683 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19766 -40.42300 -36.98946 -35.07023 -34.31571 -33.12744 -31.71449 -27.29651 -26.68593 -25.36634 -23.33392 -21.59050 -20.01703 -18.62610 -18.37870 -17.33985 -16.66889 -16.46586 -16.44504 -15.91838 -15.38768 -14.92452 -14.80587 -14.59407 -14.15272 -13.71243 -13.27994 -12.80461 -12.17033 -12.01064 -11.90425 -11.71456 -11.36068 -11.33451 -10.89203 -10.81529 -10.37033 -10.01715 -8.39164 -6.46717 -0.59281 -0.06438 1.28362 1.36158 1.45814 1.70055 2.06179 2.25766 2.80143 2.92121 2.96506 3.19306 3.59650 3.78775 4.04668 4.39153 4.50414 4.56735 4.62902 4.68724 4.93217 5.25745 5.27578 5.35371 5.50008 5.75706 6.08506 6.52998 6.65925 6.93308 7.07758 7.24024 8.76224 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055309 B = 0.006844 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.127838 B = 4090.238445 C = 4424.039765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.238 3.762 3 H 0.032 0.968 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.942 3.058 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.258 1.258 12 N -0.676 5.676 13 C 0.553 3.447 14 O -0.569 6.569 15 C 0.116 3.884 16 C -0.170 4.170 17 C 0.163 3.837 18 N -0.516 5.516 19 C 0.290 3.710 20 N -0.516 5.516 21 H 0.046 0.954 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.272 0.728 25 H 0.412 0.588 26 H 0.169 0.831 27 H 0.221 0.779 28 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -0.354 -17.694 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.050 0.950 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.171 4.171 7 N -0.571 5.571 8 Si 0.769 3.231 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.324 5.324 13 C 0.337 3.663 14 O -0.449 6.449 15 C -0.031 4.031 16 C -0.193 4.193 17 C -0.005 4.005 18 N -0.230 5.230 19 C 0.003 3.997 20 N -0.233 5.233 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.248 0.752 26 H 0.187 0.813 27 H 0.237 0.763 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.053 -0.497 -17.373 17.381 hybrid contribution -0.420 0.882 0.779 1.250 sum -0.367 0.385 -16.594 16.603 Atomic orbital electron populations 1.22348 0.97241 1.01857 0.99906 1.18941 0.91652 0.93410 0.82588 0.95031 1.21204 1.32738 1.13717 0.89971 0.92893 1.25598 0.96813 0.99573 0.95112 1.69986 1.46471 1.41973 0.98715 0.85956 0.79694 0.80023 0.77474 1.18308 1.21823 1.18222 1.45997 1.62872 1.14812 1.08734 1.18349 0.78436 0.86056 0.83418 1.90715 1.52753 1.16161 1.85235 1.21540 0.96054 0.91092 0.94375 1.23203 0.99114 1.04226 0.92787 1.24035 0.87818 0.89070 0.99526 1.68480 1.15876 1.11426 1.27263 1.25638 0.89941 1.01910 0.82211 1.68357 1.11976 1.08868 1.34092 0.93515 0.93129 0.91758 0.91924 0.75172 0.81304 0.76307 0.75237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.76 8.96 71.98 0.65 -6.12 15 2 C 0.24 11.50 2.15 44.25 0.10 11.59 15 3 H 0.03 1.66 6.63 -2.39 -0.02 1.64 15 4 C -0.54 -29.90 9.31 25.60 0.24 -29.67 15 5 H 0.05 3.17 7.98 -2.91 -0.02 3.15 15 6 C 0.03 1.64 5.45 84.65 0.46 2.10 15 7 N -0.93 -56.21 13.96 21.45 0.30 -55.91 15 8 Si 0.94 44.24 24.37 68.60 1.67 45.91 15 9 H -0.26 -11.30 6.87 99.48 0.68 -10.62 15 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 11 H -0.26 -11.87 6.53 99.48 0.65 -11.22 15 12 N -0.68 -28.42 5.06 -448.40 -2.27 -30.69 15 13 C 0.55 21.57 7.79 86.97 0.68 22.25 15 14 O -0.57 -24.80 16.09 -3.64 -0.06 -24.86 15 15 C 0.12 3.55 6.79 41.99 0.29 3.83 15 16 C -0.17 -3.90 9.72 22.71 0.22 -3.68 15 17 C 0.16 2.76 11.31 84.76 0.96 3.72 15 18 N -0.52 -10.36 10.42 -200.09 -2.09 -12.45 15 19 C 0.29 6.26 12.28 180.92 2.22 8.48 15 20 N -0.52 -14.61 9.70 -189.15 -1.84 -16.44 15 21 H 0.05 2.05 3.27 -2.39 -0.01 2.04 15 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.06 2.65 8.14 -2.38 -0.02 2.63 15 24 H 0.27 15.27 8.31 -92.70 -0.77 14.50 15 25 H 0.41 16.42 7.93 -92.71 -0.73 15.68 15 26 H 0.17 3.49 7.74 -2.91 -0.02 3.47 15 27 H 0.22 1.59 8.06 -2.91 -0.02 1.57 15 28 H 0.23 3.23 8.06 -2.91 -0.02 3.21 15 Total: -1.00 -68.53 248.13 1.90 -66.63 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.38 Total: 15.30 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.80 Total: 12.51 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -5.89 Total: -115.49 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.67 Total: 45.91 kcal Total: -68.53 1.90 -66.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.736 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds