Wall clock time and date at job start Sun Mar 29 2020 21:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 120.00184 * 2 1 4 4 C 1.50698 * 109.47126 * 269.72886 * 3 2 1 5 5 H 1.07994 * 120.00128 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99952 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00319 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 120.00091 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47036 * 90.00057 * 8 6 4 10 10 H 1.48495 * 109.47202 * 210.00431 * 8 6 4 11 11 H 1.48505 * 109.46928 * 330.00511 * 8 6 4 12 12 C 1.34774 * 119.99785 * 179.72580 * 2 1 3 13 13 O 1.21479 * 119.99982 * 177.23940 * 12 2 1 14 14 C 1.48461 * 120.00020 * 357.23417 * 12 2 1 15 15 C 1.39533 * 120.54672 * 186.71086 * 14 12 2 16 16 C 1.38761 * 118.26019 * 179.97438 * 15 14 12 17 17 N 1.32206 * 119.15005 * 0.02562 * 16 15 14 18 18 C 1.31876 * 121.03412 * 0.02562 * 17 16 15 19 19 N 1.31591 * 121.91650 * 359.72966 * 18 17 16 20 20 H 1.08993 * 109.46825 * 96.03101 * 1 2 3 21 21 H 1.09001 * 109.46879 * 216.03562 * 1 2 3 22 22 H 1.09002 * 109.46990 * 336.03177 * 1 2 3 23 23 H 1.09007 * 109.47063 * 29.72551 * 3 2 1 24 24 H 1.08999 * 109.47424 * 149.72326 * 3 2 1 25 25 H 0.96994 * 120.00610 * 179.97438 * 7 6 4 26 26 H 1.07993 * 120.87344 * 0.02562 * 15 14 12 27 27 H 1.08009 * 120.42484 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.04198 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4546 1.7003 -1.4208 5 1 2.1074 1.0904 -2.2416 6 6 3.1339 2.8734 -1.6727 7 7 3.3586 3.2499 -2.9126 8 14 3.7351 3.9280 -0.2529 9 1 5.1066 3.5070 0.1304 10 1 3.7527 5.3537 -0.6680 11 1 2.8237 3.7616 0.9078 12 6 2.1389 -1.1672 0.0056 13 8 3.3526 -1.1681 -0.0451 14 6 1.3978 -2.4518 0.0738 15 6 2.0826 -3.6586 0.2207 16 6 1.3427 -4.8310 0.2796 17 7 0.0249 -4.7657 0.1948 18 6 -0.5909 -3.6080 0.0554 19 7 0.0694 -2.4711 -0.0005 20 1 -0.3633 -0.1080 -1.0219 21 1 -0.3633 -0.8310 0.6046 22 1 -0.3633 0.9391 0.4175 23 1 1.6063 2.0296 0.5096 24 1 3.1478 1.1396 0.5181 25 1 3.8362 4.0753 -3.0898 26 1 3.1603 -3.6797 0.2876 27 1 1.8369 -5.7846 0.3933 28 1 -1.6688 -3.5920 -0.0102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259644556.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:44 Heat of formation + Delta-G solvation = 38.620526 kcal Electronic energy + Delta-G solvation = -14543.097348 eV Core-core repulsion = 11981.596946 eV Total energy + Delta-G solvation = -2561.500403 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17199 -38.78520 -35.18131 -33.86828 -32.43703 -32.04794 -28.61523 -26.32847 -24.94694 -24.39123 -22.40107 -19.74343 -17.65758 -17.14642 -16.98691 -15.65785 -15.36529 -15.22585 -15.14160 -14.31939 -13.83984 -13.68534 -13.06912 -12.41074 -12.31714 -12.09782 -11.57857 -11.04002 -10.81576 -10.74342 -10.50464 -10.14962 -9.84186 -9.75386 -9.55017 -8.87714 -8.60544 -7.75216 -6.10043 -4.09476 0.58327 0.86372 3.15074 3.27903 3.33511 3.35023 3.48540 3.93360 4.02425 4.06943 4.37784 4.62550 4.88609 4.98347 5.22006 5.46796 5.58017 5.89722 6.08383 6.30427 6.54078 6.64839 6.78133 6.84650 7.25649 7.56522 7.87833 8.10492 8.42032 8.72877 8.93704 9.48915 11.03325 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.054652 B = 0.007061 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.206232 B = 3964.483259 C = 4108.245964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.568 5.568 3 C 0.213 3.787 4 C -0.529 4.529 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.551 3.449 13 O -0.526 6.526 14 C 0.146 3.854 15 C -0.174 4.174 16 C 0.145 3.855 17 N -0.517 5.517 18 C 0.283 3.717 19 N -0.487 5.487 20 H 0.054 0.946 21 H 0.097 0.903 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.265 0.735 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 -12.357 8.267 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.297 5.297 3 C 0.092 3.908 4 C -0.568 4.568 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.334 3.666 13 O -0.403 6.403 14 C -0.001 4.001 15 C -0.197 4.197 16 C -0.021 4.021 17 N -0.231 5.231 18 C -0.005 4.005 19 N -0.204 5.204 20 H 0.072 0.928 21 H 0.115 0.885 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.177 0.823 27 H 0.190 0.810 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.311 -12.103 8.068 16.280 hybrid contribution 1.144 0.654 0.479 1.402 sum -6.167 -11.449 8.547 15.562 Atomic orbital electron populations 1.22282 0.79210 1.02379 1.02583 1.47793 1.07578 1.06346 1.67979 1.19831 0.92494 0.79664 0.98761 1.21280 1.37113 1.07355 0.91040 0.90700 1.24856 0.95172 0.97290 0.95646 1.69891 1.41245 1.23633 1.18676 0.86839 0.80094 0.79833 0.82865 1.19842 1.20977 1.19028 1.17735 0.86669 0.82612 0.79544 1.90775 1.12648 1.86191 1.50637 1.22103 0.89964 0.95501 0.92579 1.22996 1.03991 0.93019 0.99688 1.23293 0.89487 0.98588 0.90757 1.68319 1.11285 1.30527 1.12983 1.25145 1.01499 0.82724 0.91132 1.68983 1.08266 1.30119 1.13050 0.92783 0.88550 0.92369 0.94675 0.94433 0.92490 0.82268 0.80956 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 9.45 59.85 0.57 1.92 15 2 N -0.57 -12.26 2.86 -183.85 -0.53 -12.79 15 3 C 0.21 5.27 4.25 -5.20 -0.02 5.25 15 4 C -0.53 -15.43 9.94 -34.44 -0.34 -15.77 15 5 H 0.07 2.41 8.06 -52.49 -0.42 1.99 15 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 7 N -0.90 -27.78 13.96 55.43 0.77 -27.01 15 8 Si 0.88 21.48 27.47 -169.99 -4.67 16.82 15 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 11 H -0.27 -6.10 6.54 56.52 0.37 -5.73 15 12 C 0.55 11.67 7.67 -12.05 -0.09 11.58 15 13 O -0.53 -12.82 16.05 5.38 0.09 -12.73 15 14 C 0.15 2.42 6.66 -82.64 -0.55 1.87 15 15 C -0.17 -2.34 9.72 -38.91 -0.38 -2.72 15 16 C 0.15 1.57 11.31 -17.20 -0.19 1.38 15 17 N -0.52 -6.13 10.42 -14.59 -0.15 -6.28 15 18 C 0.28 3.31 12.28 -92.26 -1.13 2.18 15 19 N -0.49 -7.08 6.20 -11.14 -0.07 -7.15 15 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.10 1.45 5.17 -52.24 -0.27 1.18 15 22 H 0.06 0.93 7.82 -51.93 -0.41 0.52 15 23 H 0.04 0.82 6.91 -51.92 -0.36 0.46 15 24 H 0.04 0.97 6.89 -51.93 -0.36 0.61 15 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 15 26 H 0.16 2.01 7.75 -52.49 -0.41 1.60 15 27 H 0.17 1.19 8.06 -52.48 -0.42 0.76 15 28 H 0.20 1.57 8.06 -52.49 -0.42 1.14 15 LS Contribution 249.61 15.07 3.76 3.76 Total: -1.00 -34.30 249.61 -5.70 -39.99 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -2.66 Total: -2.34 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.24 Total: 7.73 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.03 Total: -53.23 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.30 -5.70 -39.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644556.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.615 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds