Wall clock time and date at job start Sun Mar 29 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31791 * 119.08239 * 2 1 4 4 C 1.32542 * 121.00846 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.40062 * 180.02562 * 4 3 2 6 6 C 1.38125 * 119.20282 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.83581 * 179.73044 * 6 4 3 8 8 C 1.39630 * 118.32829 * 0.02562 * 6 4 3 9 9 N 1.38544 * 120.52691 * 179.97438 * 8 6 4 10 10 C 1.46493 * 119.99619 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47122 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00023 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00065 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00312 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99885 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46927 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46888 * 119.99928 * 15 13 11 18 18 H 1.48506 * 109.46798 * 239.99553 * 15 13 11 19 19 N 1.31744 * 119.08342 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.46881 * 89.99997 * 1 2 3 21 21 H 1.08997 * 109.47263 * 209.99604 * 1 2 3 22 22 H 1.08992 * 109.46756 * 330.00267 * 1 2 3 23 23 H 1.08997 * 109.47043 * 269.97927 * 5 4 3 24 24 H 1.09002 * 109.46921 * 29.97553 * 5 4 3 25 25 H 1.09010 * 109.47055 * 149.97611 * 5 4 3 26 26 H 1.08999 * 109.47626 * 89.99877 * 7 6 4 27 27 H 1.09004 * 109.47046 * 210.00028 * 7 6 4 28 28 H 1.09005 * 109.46929 * 329.99860 * 7 6 4 29 29 H 0.96996 * 120.00128 * 359.97438 * 9 8 6 30 30 H 1.08998 * 109.47779 * 300.00064 * 10 9 8 31 31 H 1.09002 * 109.47391 * 60.00010 * 10 9 8 32 32 H 0.96997 * 119.99991 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4724 1.1963 -0.0005 5 6 4.1908 2.5210 0.0001 6 6 4.1864 0.0139 -0.0016 7 6 5.6933 0.0216 -0.0083 8 6 3.4768 -1.1886 -0.0026 9 7 4.1470 -2.4012 -0.0043 10 6 3.3909 -3.6559 -0.0048 11 6 4.3486 -4.8195 -0.0060 12 1 5.4139 -4.6421 -0.0067 13 6 3.8648 -6.1105 -0.0072 14 7 2.5674 -6.3267 -0.0068 15 14 5.0519 -7.5529 -0.0079 16 1 6.4475 -7.0453 -0.0077 17 1 4.8256 -8.3809 1.2038 18 1 4.8263 -8.3790 -1.2212 19 7 2.1475 -1.1513 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 4.3640 2.8409 -1.0274 24 1 3.5817 3.2645 0.5143 25 1 5.1465 2.4158 0.5139 26 1 6.0613 0.0253 1.0177 27 1 6.0589 -0.8674 -0.5222 28 1 6.0498 0.9126 -0.5253 29 1 5.1168 -2.4193 -0.0051 30 1 2.7640 -3.7028 0.8856 31 1 2.7626 -3.7011 -0.8943 32 1 2.2271 -7.2350 -0.0073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260024627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:03 Heat of formation + Delta-G solvation = 29.254742 kcal Electronic energy + Delta-G solvation = -14611.106921 eV Core-core repulsion = 12185.033482 eV Total energy + Delta-G solvation = -2426.073439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51392 -35.97457 -34.53357 -33.05791 -31.19225 -29.78815 -28.69692 -26.99476 -25.02153 -22.81505 -21.40461 -20.80718 -17.59909 -16.89035 -15.70747 -15.10468 -14.74920 -14.17611 -13.76734 -13.33830 -13.24421 -13.11574 -12.66748 -12.55717 -12.26443 -12.12346 -11.99880 -11.71239 -11.69350 -11.01780 -10.91556 -10.30311 -10.18896 -10.10546 -9.39170 -8.93808 -8.57855 -8.48666 -7.15871 -6.20029 -4.26833 1.54023 2.01346 3.21188 3.28369 3.31435 3.95702 4.31647 4.35777 4.48050 4.79387 5.16397 5.23726 5.29107 5.42014 5.62501 5.66146 5.77502 5.79935 5.90541 5.93273 6.06518 6.09903 6.30698 6.41956 6.91595 7.24653 7.50509 7.55332 7.56376 7.92620 8.12052 8.47699 8.77105 9.03676 9.39146 10.90086 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.006810 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.140729 B = 4110.414896 C = 4816.504238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.352 3.648 3 N -0.580 5.580 4 C 0.192 3.808 5 C -0.100 4.100 6 C -0.284 4.284 7 C -0.090 4.090 8 C 0.445 3.555 9 N -0.686 5.686 10 C 0.256 3.744 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.571 5.571 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.402 0.598 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 13.015 -0.004 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 N -0.302 5.302 4 C 0.051 3.949 5 C -0.157 4.157 6 C -0.295 4.295 7 C -0.148 4.148 8 C 0.198 3.802 9 N -0.313 5.313 10 C 0.135 3.865 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.297 5.297 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.238 0.762 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.430 12.601 0.000 12.682 hybrid contribution 1.808 -1.040 -0.037 2.086 sum 3.237 11.560 -0.038 12.005 Atomic orbital electron populations 1.20466 0.86595 1.03470 1.03282 1.22791 0.97357 0.82876 0.88760 1.68002 1.08984 1.30047 1.23201 1.21021 0.89469 0.94413 0.90013 1.20674 0.99482 0.92751 1.02805 1.20609 0.97778 0.93325 1.17802 1.20417 0.90465 1.02280 1.01680 1.18597 0.88343 0.86712 0.86558 1.45482 1.08834 1.03640 1.73394 1.19148 0.91808 0.77652 0.97853 1.21260 0.93041 0.90795 1.53293 0.91994 1.24926 0.95363 0.98945 0.94631 1.69982 1.11833 1.21439 1.48888 0.86367 0.80820 0.81967 0.77798 1.19660 1.20733 1.20743 1.67914 1.07687 1.30300 1.23781 0.90210 0.89871 0.90282 0.90477 0.90596 0.90670 0.91853 0.92040 0.91586 0.76158 0.95376 0.95406 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.32 36.01 0.37 -0.79 16 2 C 0.35 6.69 7.64 -157.24 -1.20 5.48 16 3 N -0.58 -10.48 10.27 -7.07 -0.07 -10.55 16 4 C 0.19 3.17 6.82 -82.33 -0.56 2.61 16 5 C -0.10 -1.15 9.44 36.01 0.34 -0.81 16 6 C -0.28 -4.93 5.93 -104.15 -0.62 -5.55 16 7 C -0.09 -1.20 8.86 36.00 0.32 -0.88 16 8 C 0.45 9.36 7.50 -154.77 -1.16 8.20 16 9 N -0.69 -15.05 5.61 -61.45 -0.34 -15.39 16 10 C 0.26 6.77 5.48 -5.20 -0.03 6.74 16 11 C -0.55 -14.88 9.28 -34.44 -0.32 -15.20 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.88 -25.86 13.29 55.43 0.74 -25.12 16 15 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 N -0.57 -12.50 9.60 -9.96 -0.10 -12.60 16 20 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 21 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.73 6.81 -51.92 -0.35 0.37 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.82 6.67 -51.93 -0.35 0.48 16 28 H 0.07 0.72 6.83 -51.93 -0.35 0.36 16 29 H 0.40 7.86 6.45 -40.82 -0.26 7.59 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 274.15 15.07 4.13 4.13 Total: -1.00 -31.32 274.15 -7.85 -39.18 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.23 Total: 3.02 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -2.96 Total: 1.50 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.22 Total: -63.67 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.32 -7.85 -39.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.431 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds