Wall clock time and date at job start Sun Mar 29 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31791 * 119.08239 * 2 1 4 4 C 1.32542 * 121.00846 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.40062 * 180.02562 * 4 3 2 6 6 C 1.38125 * 119.20282 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.83581 * 179.73044 * 6 4 3 8 8 C 1.39630 * 118.32829 * 0.02562 * 6 4 3 9 9 N 1.38544 * 120.52691 * 179.97438 * 8 6 4 10 10 C 1.46493 * 119.99619 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47122 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00023 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00065 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00312 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99885 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46927 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46888 * 119.99928 * 15 13 11 18 18 H 1.48506 * 109.46798 * 239.99553 * 15 13 11 19 19 N 1.31744 * 119.08342 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.46881 * 89.99997 * 1 2 3 21 21 H 1.08997 * 109.47263 * 209.99604 * 1 2 3 22 22 H 1.08992 * 109.46756 * 330.00267 * 1 2 3 23 23 H 1.08997 * 109.47043 * 269.97927 * 5 4 3 24 24 H 1.09002 * 109.46921 * 29.97553 * 5 4 3 25 25 H 1.09010 * 109.47055 * 149.97611 * 5 4 3 26 26 H 1.08999 * 109.47626 * 89.99877 * 7 6 4 27 27 H 1.09004 * 109.47046 * 210.00028 * 7 6 4 28 28 H 1.09005 * 109.46929 * 329.99860 * 7 6 4 29 29 H 0.96996 * 120.00128 * 359.97438 * 9 8 6 30 30 H 1.08998 * 109.47779 * 300.00064 * 10 9 8 31 31 H 1.09002 * 109.47391 * 60.00010 * 10 9 8 32 32 H 0.96997 * 119.99991 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4724 1.1963 -0.0005 5 6 4.1908 2.5210 0.0001 6 6 4.1864 0.0139 -0.0016 7 6 5.6933 0.0216 -0.0083 8 6 3.4768 -1.1886 -0.0026 9 7 4.1470 -2.4012 -0.0043 10 6 3.3909 -3.6559 -0.0048 11 6 4.3486 -4.8195 -0.0060 12 1 5.4139 -4.6421 -0.0067 13 6 3.8648 -6.1105 -0.0072 14 7 2.5674 -6.3267 -0.0068 15 14 5.0519 -7.5529 -0.0079 16 1 6.4475 -7.0453 -0.0077 17 1 4.8256 -8.3809 1.2038 18 1 4.8263 -8.3790 -1.2212 19 7 2.1475 -1.1513 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 4.3640 2.8409 -1.0274 24 1 3.5817 3.2645 0.5143 25 1 5.1465 2.4158 0.5139 26 1 6.0613 0.0253 1.0177 27 1 6.0589 -0.8674 -0.5222 28 1 6.0498 0.9126 -0.5253 29 1 5.1168 -2.4193 -0.0051 30 1 2.7640 -3.7028 0.8856 31 1 2.7626 -3.7011 -0.8943 32 1 2.2271 -7.2350 -0.0073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260024627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:03 Heat of formation + Delta-G solvation = 8.885547 kcal Electronic energy + Delta-G solvation = -14611.990195 eV Core-core repulsion = 12185.033482 eV Total energy + Delta-G solvation = -2426.956714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.95354 -37.64817 -35.83330 -35.03446 -32.89658 -31.01719 -29.90674 -28.83282 -26.35189 -24.70994 -22.95260 -22.21023 -19.30123 -18.57452 -17.49313 -16.67507 -16.51700 -15.53563 -15.15417 -14.85509 -14.84414 -14.41045 -14.17025 -13.82948 -13.67860 -13.40477 -13.14676 -13.10116 -12.82650 -12.77170 -12.70949 -12.22222 -11.77420 -11.52646 -11.43376 -10.75956 -10.29241 -9.98215 -8.79380 -8.31702 -6.48067 0.15655 0.51913 1.40411 1.41468 1.54764 2.27155 2.47883 2.92287 3.03333 3.22419 3.43722 3.89516 4.11850 4.21172 4.48043 4.72373 4.74353 4.78241 4.82642 4.85539 4.91640 5.07788 5.08839 5.12866 5.27354 5.27832 5.46704 5.72290 5.80403 6.01032 6.36847 6.61504 6.92468 7.23738 7.52622 8.80439 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.006810 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.140729 B = 4110.414896 C = 4816.504238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.332 3.668 3 N -0.580 5.580 4 C 0.185 3.815 5 C -0.095 4.095 6 C -0.280 4.280 7 C -0.089 4.089 8 C 0.415 3.585 9 N -0.692 5.692 10 C 0.283 3.717 11 C -0.561 4.561 12 H 0.077 0.923 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.983 3.017 16 H -0.256 1.256 17 H -0.277 1.277 18 H -0.277 1.277 19 N -0.614 5.614 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.412 0.588 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 14.444 -0.048 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 N -0.302 5.302 4 C 0.043 3.957 5 C -0.152 4.152 6 C -0.291 4.291 7 C -0.147 4.147 8 C 0.170 3.830 9 N -0.323 5.323 10 C 0.160 3.840 11 C -0.599 4.599 12 H 0.095 0.905 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.806 3.194 16 H -0.180 1.180 17 H -0.202 1.202 18 H -0.203 1.203 19 N -0.341 5.341 20 H 0.111 0.889 21 H 0.094 0.906 22 H 0.121 0.879 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.251 0.749 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.504 14.097 -0.043 14.526 hybrid contribution 1.098 -1.316 -0.025 1.714 sum 4.602 12.781 -0.068 13.584 Atomic orbital electron populations 1.20566 0.84226 1.04247 1.04376 1.23505 0.99009 0.82528 0.88642 1.68142 1.10091 1.29278 1.22639 1.21938 0.89135 0.96374 0.88228 1.20830 1.00056 0.89775 1.04532 1.21040 1.00028 0.91942 1.16054 1.20533 0.87333 1.03728 1.03056 1.19028 0.88726 0.87486 0.87800 1.45051 1.08926 1.02698 1.75634 1.18465 0.91362 0.80066 0.94085 1.21636 0.93789 0.91286 1.53171 0.90517 1.26003 0.97207 1.02247 0.93775 1.70133 1.14206 1.22386 1.49796 0.85141 0.78771 0.77639 0.77845 1.17999 1.20246 1.20255 1.67886 1.08913 1.32290 1.25031 0.88852 0.90577 0.87918 0.88456 0.89759 0.88157 0.90359 0.92398 0.88320 0.74936 0.99364 0.99393 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.23 10.32 71.24 0.74 -1.49 16 2 C 0.33 12.75 7.64 138.77 1.06 13.81 16 3 N -0.58 -20.29 10.27 -176.27 -1.81 -22.10 16 4 C 0.19 5.71 6.82 42.42 0.29 5.99 16 5 C -0.09 -1.80 9.44 71.24 0.67 -1.13 16 6 C -0.28 -9.36 5.93 -19.56 -0.12 -9.48 16 7 C -0.09 -2.11 8.86 71.23 0.63 -1.47 16 8 C 0.41 17.82 7.50 133.16 1.00 18.82 16 9 N -0.69 -31.40 5.61 -348.33 -1.95 -33.35 16 10 C 0.28 15.81 5.48 85.64 0.47 16.28 16 11 C -0.56 -31.25 9.28 25.60 0.24 -31.02 16 12 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 13 C 0.01 0.43 5.46 84.65 0.46 0.89 16 14 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 15 Si 0.98 42.81 29.54 68.60 2.03 44.83 16 16 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 19 N -0.61 -28.04 9.60 -185.43 -1.78 -29.82 16 20 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 21 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.10 1.44 6.81 -2.38 -0.02 1.42 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.43 6.67 -2.38 -0.02 1.42 16 28 H 0.10 1.70 6.83 -2.38 -0.02 1.68 16 29 H 0.41 16.29 6.45 -92.71 -0.60 15.69 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -70.76 274.15 2.73 -68.03 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.53 Total: 16.88 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.44 Total: 11.19 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.26 Total: -140.94 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.76 2.73 -68.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.916 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds