Wall clock time and date at job start Sun Mar 29 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46776 * 2 1 4 4 C 1.38112 * 120.39646 * 124.99716 * 3 2 1 5 5 C 1.39626 * 118.33455 * 180.02562 * 4 3 2 6 6 N 1.38542 * 120.53441 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99875 * 0.02562 * 6 5 4 8 8 C 1.50701 * 109.46992 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 N 1.32995 * 118.93122 * 0.25653 * 5 4 3 17 17 C 1.31744 * 120.68846 * 359.48957 * 16 5 4 18 18 C 1.50704 * 119.08547 * 180.26666 * 17 16 5 19 19 N 1.31788 * 121.83237 * 0.52107 * 17 16 5 20 20 H 1.08998 * 109.47759 * 299.99553 * 1 2 3 21 21 H 1.09005 * 109.47330 * 60.00120 * 1 2 3 22 22 H 1.09007 * 109.46874 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47037 * 240.00286 * 2 1 3 24 24 H 1.08997 * 109.47173 * 120.00073 * 2 1 3 25 25 H 1.08001 * 120.83487 * 0.02562 * 4 3 2 26 26 H 0.97000 * 119.99704 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.47391 * 59.99672 * 7 6 5 28 28 H 1.09001 * 109.46813 * 299.99728 * 7 6 5 29 29 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 30 30 H 1.09002 * 109.46949 * 270.25296 * 18 17 16 31 31 H 1.09005 * 109.46917 * 30.24850 * 18 17 16 32 32 H 1.09000 * 109.47439 * 150.25002 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9094 1.8520 0.9759 5 6 3.3468 3.1774 0.9350 6 7 4.2263 3.6581 1.8915 7 6 4.7052 2.7736 2.9566 8 6 5.6432 3.5347 3.8577 9 1 5.8605 4.5734 3.6573 10 6 6.2233 2.9051 4.9386 11 7 5.9583 1.6403 5.1829 12 14 7.3854 3.8487 6.0559 13 1 6.6679 5.0025 6.6554 14 1 7.8710 2.9521 7.1355 15 1 8.5415 4.3415 5.2649 16 7 2.9012 3.9724 -0.0335 17 6 2.0683 3.5173 -0.9472 18 6 1.5909 4.4481 -2.0321 19 7 1.6372 2.2720 -0.9361 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.2484 1.1809 1.7512 26 1 4.5254 4.5801 1.8555 27 1 5.2320 1.9269 2.5164 28 1 3.8568 2.4116 3.5373 29 1 6.3666 1.1973 5.9431 30 1 0.6822 4.9526 -1.7039 31 1 2.3628 5.1890 -2.2407 32 1 1.3827 3.8759 -2.9361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:55 Heat of formation + Delta-G solvation = 8.057529 kcal Electronic energy + Delta-G solvation = -14403.326543 eV Core-core repulsion = 11976.333923 eV Total energy + Delta-G solvation = -2426.992619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89009 -37.70327 -36.01109 -34.91346 -32.70179 -32.02557 -29.22906 -28.97395 -25.53553 -25.05284 -22.62750 -22.20362 -19.63294 -18.18092 -17.42404 -16.70843 -16.36828 -16.14121 -15.48737 -15.26144 -14.99316 -14.74683 -14.25094 -14.08676 -13.55671 -13.17330 -13.13820 -12.90550 -12.74699 -12.39461 -12.27703 -12.13418 -11.73118 -11.64784 -11.47281 -10.78692 -10.45384 -10.11134 -8.96448 -8.35299 -6.49768 0.15005 0.46112 1.41189 1.43578 1.51869 2.18374 2.42119 2.91200 3.00985 3.17167 3.41867 3.85340 4.18006 4.29075 4.41032 4.53932 4.65785 4.72846 4.79798 4.83192 4.99606 5.04457 5.12086 5.16214 5.19899 5.37035 5.43558 5.62371 5.75636 5.88777 6.44592 6.57053 6.84999 7.21518 7.40759 8.76035 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036569 B = 0.006253 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.493933 B = 4476.937768 C = 5167.042638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C 0.203 3.797 4 C -0.320 4.320 5 C 0.424 3.576 6 N -0.693 5.693 7 C 0.273 3.727 8 C -0.564 4.564 9 H 0.071 0.929 10 C 0.015 3.985 11 N -0.922 5.922 12 Si 0.978 3.022 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.267 1.267 16 N -0.608 5.608 17 C 0.341 3.659 18 C -0.074 4.074 19 N -0.574 5.574 20 H 0.040 0.960 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.131 0.869 26 H 0.402 0.598 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.272 0.728 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -0.258 -10.055 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C 0.061 3.939 4 C -0.348 4.348 5 C 0.179 3.821 6 N -0.321 5.321 7 C 0.151 3.849 8 C -0.602 4.602 9 H 0.089 0.911 10 C -0.186 4.186 11 N -0.560 5.560 12 Si 0.802 3.198 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.192 1.192 16 N -0.336 5.336 17 C 0.072 3.928 18 C -0.132 4.132 19 N -0.296 5.296 20 H 0.059 0.941 21 H 0.080 0.920 22 H 0.102 0.898 23 H 0.118 0.882 24 H 0.105 0.895 25 H 0.149 0.851 26 H 0.237 0.763 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.280 0.028 -10.411 13.302 hybrid contribution 1.246 0.070 1.628 2.051 sum -7.034 0.098 -8.783 11.253 Atomic orbital electron populations 1.21593 0.92694 1.02958 1.01834 1.20621 0.98003 0.88014 1.04334 1.21806 0.87993 0.97165 0.86933 1.22097 1.09161 0.96911 1.06672 1.18981 0.86596 0.89592 0.86908 1.45109 1.45283 1.15108 1.26617 1.18789 0.93111 0.89409 0.83580 1.21484 1.28346 0.98444 1.11886 0.91072 1.25859 0.98091 0.95876 0.98735 1.70043 1.44375 1.11731 1.29831 0.85299 0.78546 0.78214 0.77756 1.19167 1.20432 1.19163 1.67840 1.19787 1.38897 1.07045 1.23741 0.86748 0.90148 0.92159 1.20614 1.02357 0.96545 0.93685 1.68109 1.29890 1.04153 1.27465 0.94067 0.91987 0.89784 0.88204 0.89539 0.85139 0.76263 0.97794 0.97821 0.91955 0.88478 0.89340 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.78 71.98 0.70 -2.20 16 2 C -0.07 -1.83 6.36 29.85 0.19 -1.64 16 3 C 0.20 6.97 6.20 42.42 0.26 7.23 16 4 C -0.32 -12.88 9.02 22.58 0.20 -12.68 16 5 C 0.42 18.22 7.71 133.16 1.03 19.25 16 6 N -0.69 -31.48 5.70 -348.31 -1.99 -33.46 16 7 C 0.27 14.17 4.68 85.63 0.40 14.58 16 8 C -0.56 -30.48 9.28 25.60 0.24 -30.24 16 9 H 0.07 3.66 7.60 -2.91 -0.02 3.64 16 10 C 0.02 0.82 5.46 84.66 0.46 1.28 16 11 N -0.92 -52.49 13.29 21.45 0.28 -52.21 16 12 Si 0.98 41.88 29.54 68.60 2.03 43.91 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 N -0.61 -23.99 10.37 -185.44 -1.92 -25.91 16 17 C 0.34 11.57 7.64 138.77 1.06 12.63 16 18 C -0.07 -1.68 10.32 71.24 0.73 -0.95 16 19 N -0.57 -19.47 9.93 -176.29 -1.75 -21.22 16 20 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.06 1.40 7.98 -2.38 -0.02 1.38 16 22 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.09 2.10 7.93 -2.39 -0.02 2.08 16 25 H 0.13 5.44 6.81 -2.91 -0.02 5.42 16 26 H 0.40 17.37 8.45 -92.71 -0.78 16.59 16 27 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 28 H 0.00 0.22 7.97 -2.39 -0.02 0.20 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -62.14 278.47 2.27 -59.87 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.33 Total: 21.76 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.28 Total: 7.26 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -5.37 Total: -132.80 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -62.14 2.27 -59.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.926 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds