Wall clock time and date at job start Sun Mar 29 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31828 * 119.07854 * 2 1 4 4 C 1.32535 * 121.01891 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.39717 * 179.97438 * 4 3 2 6 6 C 1.38169 * 119.20137 * 0.02562 * 4 3 2 7 7 C 1.50699 * 120.84135 * 180.02562 * 6 4 3 8 8 C 1.39678 * 118.31943 * 0.02562 * 6 4 3 9 9 N 1.38521 * 120.53695 * 179.97438 * 8 6 4 10 10 C 1.46499 * 120.00139 * 90.71721 * 9 8 6 11 11 C 1.36934 * 119.99751 * 270.72394 * 9 8 6 12 12 H 1.08001 * 120.00204 * 20.39755 * 11 9 8 13 13 C 1.38854 * 119.99794 * 200.39928 * 11 9 8 14 14 N 1.31534 * 120.00094 * 14.55567 * 13 11 9 15 15 Si 1.86795 * 120.00003 * 194.55227 * 13 11 9 16 16 H 1.48502 * 109.47067 * 94.97720 * 15 13 11 17 17 H 1.48496 * 109.47422 * 214.97546 * 15 13 11 18 18 H 1.48502 * 109.47375 * 334.97541 * 15 13 11 19 19 N 1.31712 * 119.07491 * 179.97438 * 2 1 3 20 20 H 1.09005 * 109.46884 * 89.99609 * 1 2 3 21 21 H 1.08996 * 109.47535 * 210.00253 * 1 2 3 22 22 H 1.09006 * 109.47097 * 330.00852 * 1 2 3 23 23 H 1.09002 * 109.47001 * 90.00080 * 5 4 3 24 24 H 1.09000 * 109.47096 * 210.00563 * 5 4 3 25 25 H 1.09005 * 109.46992 * 330.00644 * 5 4 3 26 26 H 1.09001 * 109.46743 * 85.09278 * 7 6 4 27 27 H 1.09001 * 109.46890 * 205.09539 * 7 6 4 28 28 H 1.08997 * 109.47201 * 325.09266 * 7 6 4 29 29 H 1.09006 * 109.46587 * 95.20985 * 10 9 8 30 30 H 1.09002 * 109.47492 * 215.20597 * 10 9 8 31 31 H 1.08996 * 109.47136 * 335.20911 * 10 9 8 32 32 H 0.97000 * 120.00279 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1476 1.1521 0.0000 4 6 3.4722 1.1970 0.0005 5 6 4.1903 2.5219 -0.0001 6 6 4.1868 0.0144 0.0005 7 6 5.6937 0.0223 0.0017 8 6 3.4771 -1.1886 -0.0006 9 7 4.1470 -2.4010 -0.0012 10 6 4.4869 -3.0507 1.2671 11 6 4.4917 -2.9922 -1.1873 12 1 4.5507 -2.4002 -2.0886 13 6 4.7653 -4.3528 -1.2311 14 7 4.4237 -5.1251 -0.2227 15 14 5.6182 -5.0864 -2.7223 16 1 7.0797 -5.1606 -2.4698 17 1 5.0895 -6.4511 -2.9735 18 1 5.3637 -4.2307 -3.9090 19 7 2.1470 -1.1511 0.0005 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5137 23 1 4.3630 2.8420 1.0275 24 1 5.1461 2.4170 -0.5135 25 1 3.5811 3.2651 -0.5146 26 1 6.0558 0.1117 1.0259 27 1 6.0622 -0.9062 -0.4344 28 1 6.0531 0.8672 -0.5857 29 1 3.7151 -3.7772 1.5214 30 1 5.4462 -3.5590 1.1694 31 1 4.5523 -2.2995 2.0541 32 1 4.6152 -6.0756 -0.2531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:07 Heat of formation + Delta-G solvation = 47.065318 kcal Electronic energy + Delta-G solvation = -15193.092173 eV Core-core repulsion = 12767.791058 eV Total energy + Delta-G solvation = -2425.301115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.95625 -37.94554 -35.82019 -34.45517 -32.34861 -30.96663 -29.69667 -28.15807 -26.83575 -25.37302 -22.41058 -22.32235 -19.17224 -18.80832 -17.49281 -16.37285 -16.15405 -15.41256 -15.13652 -14.93718 -14.46622 -14.42032 -13.85553 -13.60481 -13.46638 -13.20180 -13.12094 -12.96308 -12.86498 -12.62298 -12.57579 -12.22669 -12.08689 -11.65063 -11.08191 -10.83518 -10.09726 -9.75412 -9.17005 -7.98612 -5.55084 0.08879 0.26488 1.44174 1.45148 1.55194 2.37267 2.85083 2.96111 3.15240 3.18377 3.65503 4.02561 4.08764 4.35591 4.48907 4.60342 4.68899 4.71710 4.76386 4.87367 4.87810 4.98083 5.07791 5.13780 5.27405 5.41350 5.43987 5.52146 5.71189 6.16676 6.34104 6.94466 7.37058 7.68308 8.04677 9.05093 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031420 B = 0.009316 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.950954 B = 3004.857676 C = 3362.532663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.294 3.706 3 N -0.542 5.542 4 C 0.163 3.837 5 C -0.095 4.095 6 C -0.211 4.211 7 C -0.088 4.088 8 C 0.416 3.584 9 N -0.558 5.558 10 C 0.188 3.812 11 C -0.275 4.275 12 H 0.065 0.935 13 C -0.035 4.035 14 N -0.928 5.928 15 Si 0.981 3.019 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.272 1.272 19 N -0.578 5.578 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.007 0.993 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 12.923 0.990 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.025 3.975 3 N -0.259 5.259 4 C 0.017 3.983 5 C -0.152 4.152 6 C -0.219 4.219 7 C -0.146 4.146 8 C 0.181 3.819 9 N -0.279 5.279 10 C 0.044 3.956 11 C -0.403 4.403 12 H 0.083 0.917 13 C -0.232 4.232 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.199 1.199 17 H -0.217 1.217 18 H -0.197 1.197 19 N -0.298 5.298 20 H 0.109 0.891 21 H 0.097 0.903 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.315 12.694 1.033 12.740 hybrid contribution 0.856 -1.254 -0.597 1.631 sum 0.541 11.440 0.436 11.461 Atomic orbital electron populations 1.20562 0.84032 1.04318 1.04251 1.23762 0.99348 0.83030 0.91366 1.68121 1.10049 1.29925 1.17756 1.22192 0.89206 0.96702 0.90214 1.20868 1.00065 0.89545 1.04742 1.22165 1.00651 0.93330 1.05754 1.20549 0.87716 1.03471 1.02819 1.19211 0.86390 0.89210 0.87059 1.41496 1.61553 1.20435 1.04450 1.20586 0.98864 0.93002 0.83156 1.19242 1.42067 0.91404 0.87586 0.91701 1.25877 1.00668 0.95827 1.00851 1.70226 1.48817 1.04702 1.33403 0.85067 0.78443 0.77204 0.78543 1.19896 1.21702 1.19659 1.68564 1.12700 1.32078 1.16490 0.89123 0.90343 0.87972 0.88202 0.88288 0.89474 0.90354 0.92369 0.88759 0.97452 0.93704 0.95883 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 10.32 71.23 0.73 -1.43 16 2 C 0.29 11.74 7.64 138.76 1.06 12.80 16 3 N -0.54 -19.88 10.27 -176.25 -1.81 -21.69 16 4 C 0.16 5.50 6.82 42.44 0.29 5.79 16 5 C -0.10 -2.04 9.83 71.24 0.70 -1.34 16 6 C -0.21 -8.28 5.94 -19.53 -0.12 -8.39 16 7 C -0.09 -2.82 9.41 71.24 0.67 -2.15 16 8 C 0.42 20.24 6.05 133.16 0.81 21.04 16 9 N -0.56 -29.87 2.19 -540.58 -1.18 -31.05 16 10 C 0.19 9.69 8.96 127.77 1.14 10.84 16 11 C -0.27 -15.55 9.09 84.04 0.76 -14.78 16 12 H 0.07 3.68 7.87 -2.91 -0.02 3.66 16 13 C -0.04 -1.97 5.07 84.88 0.43 -1.54 16 14 N -0.93 -54.65 10.64 21.65 0.23 -54.42 16 15 Si 0.98 44.65 29.58 68.60 2.03 46.68 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 N -0.58 -28.16 10.37 -185.37 -1.92 -30.08 16 20 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 21 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.10 2.45 8.14 -2.38 -0.02 2.44 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.10 1.74 6.15 -2.39 -0.01 1.73 16 25 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.06 2.24 6.95 -2.39 -0.02 2.23 16 28 H 0.09 2.29 6.28 -2.39 -0.02 2.28 16 29 H 0.01 0.41 7.40 -2.38 -0.02 0.39 16 30 H 0.04 2.36 7.21 -2.39 -0.02 2.34 16 31 H 0.02 1.04 8.00 -2.39 -0.02 1.02 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.58 270.51 4.94 -64.64 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.11 Total: 5.09 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.48 Total: 20.83 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -4.68 Total: -137.24 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.58 4.94 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.706 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds