Wall clock time and date at job start Sun Mar 29 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38628 * 120.71989 * 2 1 4 4 N 1.32266 * 119.19362 * 179.78792 * 3 2 1 5 5 C 1.32510 * 120.73788 * 0.47498 * 4 3 2 6 6 N 1.38404 * 119.21547 * 179.75340 * 5 4 3 7 7 C 1.46502 * 120.00274 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99819 * 0.02562 * 6 5 4 9 9 C 1.50705 * 109.47016 * 90.00286 * 8 6 5 10 10 H 1.07993 * 119.99675 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00045 * 179.97438 * 9 8 6 12 12 N 1.31523 * 119.99781 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00026 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46778 * 90.00475 * 13 11 9 15 15 H 1.48502 * 109.47137 * 209.99881 * 13 11 9 16 16 H 1.48494 * 109.47144 * 330.00221 * 13 11 9 17 17 N 1.32475 * 121.56615 * 359.78320 * 5 4 3 18 18 C 1.32288 * 120.74262 * 359.96979 * 17 5 4 19 19 C 1.50705 * 120.39798 * 180.02562 * 18 17 5 20 20 H 1.09002 * 109.47152 * 269.71621 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71721 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71702 * 1 2 3 23 23 H 1.07997 * 120.39917 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.46966 * 89.99495 * 7 6 5 25 25 H 1.08993 * 109.47061 * 210.00045 * 7 6 5 26 26 H 1.09003 * 109.46755 * 330.00227 * 7 6 5 27 27 H 1.09001 * 109.46884 * 209.99737 * 8 6 5 28 28 H 1.08994 * 109.47417 * 329.99798 * 8 6 5 29 29 H 0.97002 * 119.99748 * 179.97438 * 12 11 9 30 30 H 1.09006 * 109.46970 * 269.97405 * 19 18 17 31 31 H 1.08994 * 109.47297 * 29.97806 * 19 18 17 32 32 H 1.09001 * 109.46926 * 149.98233 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1918 0.0000 4 7 3.5374 1.1565 0.0043 5 6 4.1841 0.0000 -0.0009 6 7 5.5681 -0.0001 -0.0014 7 6 6.3007 -1.2688 -0.0077 8 6 6.3007 1.2687 0.0043 9 6 6.5524 1.6969 1.4272 10 1 6.2015 1.0854 2.2452 11 6 7.2308 2.8693 1.6845 12 7 7.6586 3.6137 0.6881 13 14 7.5421 3.4005 3.4481 14 1 8.8369 2.8406 3.9123 15 1 7.5908 4.8831 3.5172 16 1 6.4465 2.9000 4.3165 17 7 3.5374 -1.1562 -0.0062 18 6 2.2150 -1.1913 -0.0059 19 6 1.4872 -2.5110 -0.0114 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6936 2.1374 0.0004 24 1 6.4819 -1.5786 -1.0369 25 1 7.2532 -1.1409 0.5064 26 1 5.7117 -2.0309 0.5027 27 1 7.2529 1.1407 -0.5104 28 1 5.7115 2.0307 -0.5057 29 1 8.1355 4.4388 0.8692 30 1 1.3110 -2.8244 -1.0405 31 1 2.0913 -3.2612 0.4985 32 1 0.5327 -2.4016 0.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:38 Heat of formation + Delta-G solvation = 51.282197 kcal Electronic energy + Delta-G solvation = -14817.321413 eV Core-core repulsion = 12392.203156 eV Total energy + Delta-G solvation = -2425.118257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37403 -36.29512 -33.72869 -33.04429 -32.13442 -28.86340 -27.59887 -27.04614 -24.52793 -22.76304 -22.45527 -20.12302 -17.22354 -16.57014 -16.26125 -14.86067 -14.62078 -14.07884 -13.76673 -13.57893 -13.43607 -12.83167 -12.74958 -12.36048 -12.20879 -12.08199 -11.85168 -11.47778 -11.17624 -10.86689 -10.56743 -10.24936 -10.07078 -9.93320 -9.76577 -8.97295 -8.44812 -8.26616 -6.90802 -6.00692 -4.06919 1.79879 1.84326 3.30631 3.36781 3.41328 3.67418 4.43648 4.54649 4.69599 5.00209 5.25114 5.30980 5.37219 5.43780 5.64378 5.71054 5.79498 5.84889 5.98378 6.08745 6.14265 6.19688 6.41062 6.41905 6.86832 7.12783 7.45385 7.67335 7.84338 7.96800 8.25645 8.40480 8.92456 9.14374 9.57409 11.05043 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.007629 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.897440 B = 3669.471646 C = 4018.451687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.291 4.291 3 C 0.193 3.807 4 N -0.546 5.546 5 C 0.570 3.430 6 N -0.567 5.567 7 C 0.107 3.893 8 C 0.255 3.745 9 C -0.522 4.522 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.584 5.584 18 C 0.210 3.790 19 C -0.101 4.101 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.156 0.844 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 -8.765 -1.963 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.301 4.301 3 C 0.023 3.977 4 N -0.267 5.267 5 C 0.215 3.785 6 N -0.278 5.278 7 C -0.037 4.037 8 C 0.136 3.864 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.309 5.309 18 C 0.061 3.939 19 C -0.159 4.159 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.173 0.827 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.984 -8.582 -2.007 13.317 hybrid contribution -0.592 0.505 1.029 1.290 sum -10.576 -8.077 -0.978 13.343 Atomic orbital electron populations 1.20384 0.90556 1.01956 1.01330 1.20888 0.97832 0.95013 1.16322 1.22799 0.88938 0.97394 0.88584 1.68122 1.09281 1.28492 1.20838 1.19353 0.87503 0.83944 0.87733 1.46792 0.99473 1.09090 1.72491 1.21463 0.96584 0.85438 1.00233 1.19380 0.90887 0.78628 0.97499 1.21433 1.35706 1.06692 0.92262 0.92687 1.24904 0.95630 0.96117 0.97330 1.69937 1.38529 1.14264 1.30720 0.86513 0.78453 0.77735 0.84801 1.20660 1.21068 1.20046 1.67712 1.09373 1.29182 1.24616 1.21077 0.88734 0.94947 0.89145 1.20701 0.99364 0.92987 1.02810 0.92295 0.92137 0.92153 0.82698 0.94213 0.91185 0.91498 0.94939 0.93148 0.92751 0.90432 0.90634 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.28 36.01 0.33 -0.58 16 2 C -0.29 -4.55 5.91 -104.35 -0.62 -5.16 16 3 C 0.19 3.50 11.00 -17.22 -0.19 3.31 16 4 N -0.55 -12.52 9.11 -13.93 -0.13 -12.65 16 5 C 0.57 13.05 8.17 -322.81 -2.64 10.41 16 6 N -0.57 -13.34 2.96 -185.32 -0.55 -13.89 16 7 C 0.11 2.06 10.44 59.85 0.62 2.68 16 8 C 0.26 6.85 5.16 -5.19 -0.03 6.83 16 9 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 10 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 N -0.58 -11.75 9.05 -10.16 -0.09 -11.84 16 18 C 0.21 3.49 6.82 -82.27 -0.56 2.93 16 19 C -0.10 -1.17 9.45 36.01 0.34 -0.83 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.56 6.81 -51.93 -0.35 0.20 16 22 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 23 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.31 8.07 -51.93 -0.42 0.90 16 26 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 27 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 28 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.71 6.80 -51.93 -0.35 0.36 16 LS Contribution 275.63 15.07 4.15 4.15 Total: -1.00 -32.57 275.63 -8.44 -41.01 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.39 Total: -3.88 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -3.15 Total: 5.91 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.03 Total: -64.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.57 -8.44 -41.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.290 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds