Wall clock time and date at job start Sun Mar 29 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38628 * 120.71989 * 2 1 4 4 N 1.32266 * 119.19362 * 179.78792 * 3 2 1 5 5 C 1.32510 * 120.73788 * 0.47498 * 4 3 2 6 6 N 1.38404 * 119.21547 * 179.75340 * 5 4 3 7 7 C 1.46502 * 120.00274 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99819 * 0.02562 * 6 5 4 9 9 C 1.50705 * 109.47016 * 90.00286 * 8 6 5 10 10 H 1.07993 * 119.99675 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00045 * 179.97438 * 9 8 6 12 12 N 1.31523 * 119.99781 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00026 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46778 * 90.00475 * 13 11 9 15 15 H 1.48502 * 109.47137 * 209.99881 * 13 11 9 16 16 H 1.48494 * 109.47144 * 330.00221 * 13 11 9 17 17 N 1.32475 * 121.56615 * 359.78320 * 5 4 3 18 18 C 1.32288 * 120.74262 * 359.96979 * 17 5 4 19 19 C 1.50705 * 120.39798 * 180.02562 * 18 17 5 20 20 H 1.09002 * 109.47152 * 269.71621 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71721 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71702 * 1 2 3 23 23 H 1.07997 * 120.39917 * 0.02562 * 3 2 1 24 24 H 1.08997 * 109.46966 * 89.99495 * 7 6 5 25 25 H 1.08993 * 109.47061 * 210.00045 * 7 6 5 26 26 H 1.09003 * 109.46755 * 330.00227 * 7 6 5 27 27 H 1.09001 * 109.46884 * 209.99737 * 8 6 5 28 28 H 1.08994 * 109.47417 * 329.99798 * 8 6 5 29 29 H 0.97002 * 119.99748 * 179.97438 * 12 11 9 30 30 H 1.09006 * 109.46970 * 269.97405 * 19 18 17 31 31 H 1.08994 * 109.47297 * 29.97806 * 19 18 17 32 32 H 1.09001 * 109.46926 * 149.98233 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1918 0.0000 4 7 3.5374 1.1565 0.0043 5 6 4.1841 0.0000 -0.0009 6 7 5.5681 -0.0001 -0.0014 7 6 6.3007 -1.2688 -0.0077 8 6 6.3007 1.2687 0.0043 9 6 6.5524 1.6969 1.4272 10 1 6.2015 1.0854 2.2452 11 6 7.2308 2.8693 1.6845 12 7 7.6586 3.6137 0.6881 13 14 7.5421 3.4005 3.4481 14 1 8.8369 2.8406 3.9123 15 1 7.5908 4.8831 3.5172 16 1 6.4465 2.9000 4.3165 17 7 3.5374 -1.1562 -0.0062 18 6 2.2150 -1.1913 -0.0059 19 6 1.4872 -2.5110 -0.0114 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6936 2.1374 0.0004 24 1 6.4819 -1.5786 -1.0369 25 1 7.2532 -1.1409 0.5064 26 1 5.7117 -2.0309 0.5027 27 1 7.2529 1.1407 -0.5104 28 1 5.7115 2.0307 -0.5057 29 1 8.1355 4.4388 0.8692 30 1 1.3110 -2.8244 -1.0405 31 1 2.0913 -3.2612 0.4985 32 1 0.5327 -2.4016 0.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:38 Heat of formation + Delta-G solvation = 32.336530 kcal Electronic energy + Delta-G solvation = -14818.142959 eV Core-core repulsion = 12392.203156 eV Total energy + Delta-G solvation = -2425.939803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.82912 -37.93804 -35.16349 -34.91992 -33.75031 -30.22247 -29.31837 -28.44738 -26.17640 -24.51917 -23.80913 -21.70735 -18.72460 -18.64425 -17.96124 -16.59934 -16.34371 -15.41496 -15.24560 -15.00898 -14.98018 -14.13926 -14.00074 -13.66211 -13.55145 -13.33131 -13.28579 -13.10669 -12.75372 -12.65640 -12.53000 -12.16476 -11.79198 -11.56245 -11.38977 -10.63618 -10.52888 -9.78755 -8.60177 -8.12637 -6.35072 0.39590 0.42557 1.35480 1.37300 1.48027 2.06099 2.38933 3.06352 3.08044 3.40407 3.74876 3.89148 4.22098 4.29968 4.50687 4.64481 4.68152 4.79642 4.82209 4.87483 4.97909 5.03150 5.14289 5.20287 5.25348 5.30898 5.62159 5.76205 6.03885 6.14450 6.22173 6.68954 6.81077 7.32180 7.59950 8.85689 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.007629 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.897440 B = 3669.471646 C = 4018.451687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.270 4.270 3 C 0.169 3.831 4 N -0.597 5.597 5 C 0.544 3.456 6 N -0.589 5.589 7 C 0.112 3.888 8 C 0.278 3.722 9 C -0.536 4.536 10 H 0.041 0.959 11 C 0.013 3.987 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.277 1.277 17 N -0.592 5.592 18 C 0.192 3.808 19 C -0.095 4.095 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.180 0.820 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.268 0.732 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 -9.816 -1.166 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.279 4.279 3 C 0.002 3.998 4 N -0.320 5.320 5 C 0.189 3.811 6 N -0.303 5.303 7 C -0.031 4.031 8 C 0.156 3.844 9 C -0.575 4.575 10 H 0.060 0.940 11 C -0.186 4.186 12 N -0.566 5.566 13 Si 0.790 3.210 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.203 1.203 17 N -0.317 5.317 18 C 0.044 3.956 19 C -0.152 4.152 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.197 0.803 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.269 -9.659 -1.218 15.663 hybrid contribution -0.101 0.785 0.729 1.076 sum -12.370 -8.874 -0.489 15.232 Atomic orbital electron populations 1.20524 0.86470 1.04039 1.02958 1.21451 1.00520 0.93592 1.12296 1.23386 0.87857 0.99785 0.88765 1.68044 1.11796 1.29455 1.22703 1.19493 0.87358 0.84972 0.89293 1.46627 1.00274 1.08767 1.74644 1.21516 0.96169 0.84131 1.01272 1.18783 0.89788 0.79808 0.96001 1.21594 1.36022 1.07079 0.92770 0.94025 1.25757 0.95144 0.95962 1.01745 1.70044 1.38945 1.14680 1.32889 0.85451 0.78581 0.77614 0.79319 1.19185 1.20101 1.20256 1.67765 1.11234 1.27878 1.24815 1.22088 0.87857 0.97719 0.87900 1.20850 0.99902 0.89951 1.04534 0.90639 0.89602 0.90653 0.80273 0.92701 0.91493 0.90647 0.96483 0.96445 0.92339 0.88369 0.90666 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.28 71.24 0.66 -0.75 16 2 C -0.27 -7.79 5.91 -19.69 -0.12 -7.90 16 3 C 0.17 6.05 11.00 84.72 0.93 6.99 16 4 N -0.60 -28.22 9.11 -197.98 -1.80 -30.02 16 5 C 0.54 25.58 8.17 261.49 2.14 27.72 16 6 N -0.59 -28.83 2.96 -740.22 -2.19 -31.02 16 7 C 0.11 4.42 10.44 127.77 1.33 5.75 16 8 C 0.28 15.68 5.16 85.63 0.44 16.12 16 9 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 10 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 11 C 0.01 0.76 5.46 84.65 0.46 1.22 16 12 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 13 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 17 N -0.59 -23.62 9.05 -186.05 -1.68 -25.31 16 18 C 0.19 5.98 6.82 42.57 0.29 6.27 16 19 C -0.10 -1.84 9.45 71.24 0.67 -1.17 16 20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.09 1.10 6.81 -2.39 -0.02 1.08 16 22 H 0.07 1.12 8.10 -2.38 -0.02 1.10 16 23 H 0.18 5.15 8.06 -2.91 -0.02 5.13 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 26 H 0.07 2.78 7.33 -2.39 -0.02 2.76 16 27 H 0.02 0.99 8.07 -2.39 -0.02 0.98 16 28 H 0.02 1.08 7.33 -2.39 -0.02 1.07 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.43 6.80 -2.39 -0.02 1.41 16 Total: -1.00 -73.29 275.63 4.79 -68.50 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.10 Total: 3.50 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 7.06 Total: 22.55 kcal Atomic # 7 Polarization: -136.96 SS G_CDS: -5.39 Total: -142.35 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.29 4.79 -68.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.839 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds