Wall clock time and date at job start Sun Mar 29 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38628 * 120.71989 * 2 1 4 4 N 1.32258 * 119.19145 * 179.76302 * 3 2 1 5 5 C 1.32510 * 120.74370 * 0.52532 * 4 3 2 6 6 N 1.38404 * 119.21769 * 179.74734 * 5 4 3 7 7 C 1.46497 * 120.00377 * 359.97438 * 6 5 4 8 8 C 1.52997 * 109.47648 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47261 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00339 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99796 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00374 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00017 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47213 * 89.99717 * 13 11 9 15 15 H 1.48499 * 109.47212 * 209.99736 * 13 11 9 16 16 H 1.48496 * 109.47097 * 329.99523 * 13 11 9 17 17 N 1.32475 * 121.56223 * 359.73165 * 5 4 3 18 18 C 1.32288 * 120.74262 * 359.97438 * 17 5 4 19 19 C 1.50705 * 120.40162 * 180.02562 * 18 17 5 20 20 H 1.09002 * 109.47152 * 269.71621 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71721 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71702 * 1 2 3 23 23 H 1.07996 * 120.40066 * 0.02562 * 3 2 1 24 24 H 0.96999 * 119.99631 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47115 * 300.00229 * 7 6 5 26 26 H 1.09002 * 109.47054 * 59.99533 * 7 6 5 27 27 H 1.09001 * 109.47097 * 300.00246 * 8 7 6 28 28 H 1.09002 * 109.46921 * 59.99884 * 8 7 6 29 29 H 0.96993 * 120.00063 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.47145 * 269.98131 * 19 18 17 31 31 H 1.09003 * 109.46773 * 29.97709 * 19 18 17 32 32 H 1.08995 * 109.47324 * 149.97795 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1918 0.0000 4 7 3.5373 1.1565 0.0048 5 6 4.1841 0.0000 -0.0009 6 7 5.5681 0.0000 -0.0010 7 6 6.3007 1.2686 0.0046 8 6 7.8049 0.9890 0.0039 9 6 8.5584 2.2941 0.0104 10 1 8.0185 3.2294 0.0149 11 6 9.9372 2.2940 0.0104 12 7 10.5948 1.1550 0.0054 13 14 10.8713 3.9117 0.0191 14 1 11.1187 4.3329 1.4214 15 1 12.1689 3.7378 -0.6818 16 1 10.0689 4.9503 -0.6755 17 7 3.5374 -1.1562 -0.0062 18 6 2.2150 -1.1913 -0.0055 19 6 1.4871 -2.5109 -0.0110 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6936 2.1374 0.0004 24 1 6.0531 -0.8401 -0.0048 25 1 6.0374 1.8441 -0.8827 26 1 6.0374 1.8362 0.8971 27 1 8.0680 0.4137 0.8916 28 1 8.0685 0.4212 -0.8884 29 1 11.5648 1.1550 0.0058 30 1 1.3106 -2.8243 -1.0400 31 1 2.0915 -3.2613 0.4987 32 1 0.5329 -2.4017 0.5042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:41 Heat of formation + Delta-G solvation = 33.033293 kcal Electronic energy + Delta-G solvation = -14161.841812 eV Core-core repulsion = 11735.932223 eV Total energy + Delta-G solvation = -2425.909589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74225 -36.29646 -34.04198 -33.53302 -32.41486 -29.60768 -28.85458 -26.26078 -24.46408 -23.12267 -21.59220 -20.64756 -17.83227 -17.05194 -16.07615 -15.28418 -14.66759 -14.40120 -13.97996 -13.94299 -13.88016 -13.14714 -12.99077 -12.86131 -12.46968 -12.25312 -12.05305 -11.20178 -11.08362 -10.64361 -10.60132 -10.55221 -10.30035 -9.59688 -9.48178 -9.29021 -8.76396 -8.42248 -7.49560 -6.07511 -4.10592 1.41720 1.46067 3.30407 3.34919 3.37831 3.44019 4.14104 4.39842 4.42334 4.67609 4.96291 5.06315 5.17147 5.29402 5.44107 5.46592 5.55784 5.63246 5.84632 5.90915 6.09373 6.32494 6.38571 6.59461 6.77771 7.19121 7.47223 7.58996 7.64550 7.90610 7.98564 8.29043 8.75012 8.95480 9.53958 11.04251 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.067080 B = 0.004806 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.314317 B = 5824.112982 C = 6210.376158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.281 4.281 3 C 0.195 3.805 4 N -0.567 5.567 5 C 0.565 3.435 6 N -0.687 5.687 7 C 0.138 3.862 8 C 0.011 3.989 9 C -0.520 4.520 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 N -0.578 5.578 18 C 0.216 3.784 19 C -0.105 4.105 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.160 0.840 24 H 0.411 0.589 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.814 -4.115 -0.053 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.290 4.290 3 C 0.026 3.974 4 N -0.290 5.290 5 C 0.209 3.791 6 N -0.320 5.320 7 C 0.016 3.984 8 C -0.027 4.027 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.302 5.302 18 C 0.067 3.933 19 C -0.162 4.162 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.178 0.822 24 H 0.248 0.752 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.417 -3.986 -0.054 17.868 hybrid contribution -0.010 0.566 0.008 0.566 sum -17.428 -3.420 -0.045 17.760 Atomic orbital electron populations 1.20435 0.90092 1.02387 1.01686 1.20978 0.98218 0.94851 1.14914 1.22792 0.88632 0.97677 0.88280 1.68006 1.09957 1.28554 1.22483 1.19492 0.87740 0.84230 0.87686 1.44823 0.99739 1.11422 1.76009 1.21720 0.93565 0.82406 1.00734 1.19344 0.87243 0.98128 0.97948 1.21020 0.91227 0.92245 1.51399 0.92193 1.25004 0.97758 0.96541 0.95010 1.69962 1.07716 1.25272 1.50310 0.86501 0.79188 0.83620 0.78177 1.20565 1.21175 1.19717 1.67745 1.09718 1.28964 1.23802 1.21183 0.88484 0.95278 0.88364 1.20761 0.99491 0.92759 1.03234 0.91929 0.91780 0.91872 0.82242 0.75222 0.92577 0.92585 0.95919 0.95907 0.92834 0.90033 0.90277 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.28 36.01 0.33 -0.39 16 2 C -0.28 -3.53 5.91 -104.35 -0.62 -4.14 16 3 C 0.19 2.77 11.00 -17.22 -0.19 2.58 16 4 N -0.57 -10.36 9.59 -13.93 -0.13 -10.50 16 5 C 0.57 10.79 8.43 -322.81 -2.72 8.07 16 6 N -0.69 -13.63 5.70 -62.31 -0.36 -13.98 16 7 C 0.14 3.04 5.59 -4.05 -0.02 3.02 16 8 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 9 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 10 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 13 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 17 N -0.58 -10.07 10.39 -10.16 -0.11 -10.18 16 18 C 0.22 3.02 6.82 -82.27 -0.56 2.46 16 19 C -0.11 -1.00 9.45 36.01 0.34 -0.66 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.44 6.81 -51.93 -0.35 0.09 16 22 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 23 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 24 H 0.41 7.76 8.59 -40.82 -0.35 7.41 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.57 6.81 -51.93 -0.35 0.22 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -31.68 277.37 -9.09 -40.77 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.40 Total: 1.33 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.99 Total: -2.29 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.14 Total: -60.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.68 -9.09 -40.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.802 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds