Wall clock time and date at job start Sun Mar 29 2020 22:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38628 * 120.71989 * 2 1 4 4 N 1.32258 * 119.19145 * 179.76302 * 3 2 1 5 5 C 1.32510 * 120.74370 * 0.52532 * 4 3 2 6 6 N 1.38404 * 119.21769 * 179.74734 * 5 4 3 7 7 C 1.46497 * 120.00377 * 359.97438 * 6 5 4 8 8 C 1.52997 * 109.47648 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47261 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00339 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99796 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00374 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00017 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47213 * 89.99717 * 13 11 9 15 15 H 1.48499 * 109.47212 * 209.99736 * 13 11 9 16 16 H 1.48496 * 109.47097 * 329.99523 * 13 11 9 17 17 N 1.32475 * 121.56223 * 359.73165 * 5 4 3 18 18 C 1.32288 * 120.74262 * 359.97438 * 17 5 4 19 19 C 1.50705 * 120.40162 * 180.02562 * 18 17 5 20 20 H 1.09002 * 109.47152 * 269.71621 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71721 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71702 * 1 2 3 23 23 H 1.07996 * 120.40066 * 0.02562 * 3 2 1 24 24 H 0.96999 * 119.99631 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47115 * 300.00229 * 7 6 5 26 26 H 1.09002 * 109.47054 * 59.99533 * 7 6 5 27 27 H 1.09001 * 109.47097 * 300.00246 * 8 7 6 28 28 H 1.09002 * 109.46921 * 59.99884 * 8 7 6 29 29 H 0.96993 * 120.00063 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.47145 * 269.98131 * 19 18 17 31 31 H 1.09003 * 109.46773 * 29.97709 * 19 18 17 32 32 H 1.08995 * 109.47324 * 149.97795 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1918 0.0000 4 7 3.5373 1.1565 0.0048 5 6 4.1841 0.0000 -0.0009 6 7 5.5681 0.0000 -0.0010 7 6 6.3007 1.2686 0.0046 8 6 7.8049 0.9890 0.0039 9 6 8.5584 2.2941 0.0104 10 1 8.0185 3.2294 0.0149 11 6 9.9372 2.2940 0.0104 12 7 10.5948 1.1550 0.0054 13 14 10.8713 3.9117 0.0191 14 1 11.1187 4.3329 1.4214 15 1 12.1689 3.7378 -0.6818 16 1 10.0689 4.9503 -0.6755 17 7 3.5374 -1.1562 -0.0062 18 6 2.2150 -1.1913 -0.0055 19 6 1.4871 -2.5109 -0.0110 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6936 2.1374 0.0004 24 1 6.0531 -0.8401 -0.0048 25 1 6.0374 1.8441 -0.8827 26 1 6.0374 1.8362 0.8971 27 1 8.0680 0.4137 0.8916 28 1 8.0685 0.4212 -0.8884 29 1 11.5648 1.1550 0.0058 30 1 1.3106 -2.8243 -1.0400 31 1 2.0915 -3.2613 0.4987 32 1 0.5329 -2.4017 0.5042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:40 Heat of formation + Delta-G solvation = 13.804229 kcal Electronic energy + Delta-G solvation = -14162.675647 eV Core-core repulsion = 11735.932223 eV Total energy + Delta-G solvation = -2426.743424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.94117 -37.77788 -35.51057 -34.99666 -33.97567 -31.32250 -29.85584 -27.51874 -26.21562 -24.25080 -23.16317 -22.18757 -19.18344 -18.68642 -17.83625 -16.57702 -16.52674 -15.66812 -15.47105 -15.42957 -15.01436 -14.31399 -14.06018 -14.02631 -13.65784 -13.32692 -13.22816 -12.96186 -12.69686 -12.50335 -12.35047 -11.77510 -11.61038 -11.55069 -11.39821 -10.86411 -10.57428 -9.98935 -8.83658 -8.24971 -6.36546 0.27281 0.29652 1.41258 1.42821 1.54261 1.99686 2.41970 2.92976 3.09689 3.30338 3.69467 3.82807 4.14548 4.25316 4.45610 4.50600 4.63820 4.76453 4.83123 4.83894 4.95955 5.08973 5.19503 5.21032 5.35933 5.54770 5.59144 5.73625 5.92857 6.09901 6.23203 6.60118 6.77417 7.33053 7.44388 8.87600 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.067080 B = 0.004806 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.314317 B = 5824.112982 C = 6210.376158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.261 4.261 3 C 0.177 3.823 4 N -0.598 5.598 5 C 0.542 3.458 6 N -0.699 5.699 7 C 0.168 3.832 8 C 0.021 3.979 9 C -0.544 4.544 10 H 0.064 0.936 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.971 3.029 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.263 1.263 17 N -0.598 5.598 18 C 0.195 3.805 19 C -0.101 4.101 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.194 0.806 24 H 0.411 0.589 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.266 0.734 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.237 -3.480 -0.066 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.268 4.268 3 C 0.010 3.990 4 N -0.322 5.322 5 C 0.185 3.815 6 N -0.335 5.335 7 C 0.044 3.956 8 C -0.017 4.017 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.795 3.205 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.187 1.187 17 N -0.322 5.322 18 C 0.047 3.953 19 C -0.158 4.158 20 H 0.098 0.902 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.210 0.790 24 H 0.247 0.753 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.932 -3.360 -0.066 20.213 hybrid contribution 0.541 0.294 0.013 0.616 sum -19.391 -3.066 -0.052 19.632 Atomic orbital electron populations 1.20577 0.86338 1.04256 1.03267 1.21523 1.00695 0.93583 1.11045 1.23481 0.87554 0.99973 0.87948 1.67972 1.12132 1.28592 1.23523 1.19540 0.87287 0.85288 0.89350 1.44497 1.00573 1.10253 1.78189 1.21117 0.91260 0.83333 0.99868 1.19153 0.89777 0.96914 0.95851 1.21438 0.92066 0.93156 1.51546 0.91775 1.25961 0.98766 1.00434 0.94301 1.70089 1.08179 1.27698 1.51044 0.85360 0.77655 0.78944 0.78575 1.19663 1.20599 1.18668 1.67759 1.11671 1.28415 1.24354 1.22069 0.87602 0.97916 0.87681 1.20900 1.00101 0.90184 1.04597 0.90243 0.89849 0.90195 0.78972 0.75292 0.93358 0.93360 0.97968 0.97949 0.92549 0.88435 0.90774 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.28 71.24 0.66 -0.36 16 2 C -0.26 -5.83 5.91 -19.69 -0.12 -5.95 16 3 C 0.18 4.72 11.00 84.72 0.93 5.65 16 4 N -0.60 -21.92 9.59 -197.99 -1.90 -23.82 16 5 C 0.54 21.15 8.43 261.49 2.20 23.35 16 6 N -0.70 -29.10 5.70 -351.06 -2.00 -31.10 16 7 C 0.17 7.71 5.59 86.38 0.48 8.19 16 8 C 0.02 1.11 5.09 29.85 0.15 1.26 16 9 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 10 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 11 C 0.00 0.22 5.46 84.65 0.46 0.68 16 12 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 13 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 N -0.60 -20.85 10.39 -186.05 -1.93 -22.78 16 18 C 0.19 5.10 6.82 42.57 0.29 5.39 16 19 C -0.10 -1.63 9.45 71.24 0.67 -0.96 16 20 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.08 0.72 6.81 -2.39 -0.02 0.70 16 22 H 0.08 0.74 8.10 -2.38 -0.02 0.72 16 23 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 24 H 0.41 16.52 8.59 -92.71 -0.80 15.72 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.09 6.81 -2.39 -0.02 1.08 16 Total: -1.00 -70.26 277.37 2.77 -67.49 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.32 Total: 13.82 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.97 Total: 6.24 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -5.55 Total: -133.90 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.26 2.77 -67.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.293 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds