Wall clock time and date at job start Sun Mar 29 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47307 * 2 1 4 4 C 1.38176 * 120.40054 * 124.99729 * 3 2 1 5 5 C 1.39670 * 118.32156 * 179.97438 * 4 3 2 6 6 N 1.38520 * 120.53832 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99833 * 184.99812 * 6 5 4 8 8 C 1.36929 * 120.00221 * 5.00554 * 6 5 4 9 9 H 1.08005 * 119.99943 * 23.94623 * 8 6 5 10 10 C 1.38858 * 120.00267 * 203.95294 * 8 6 5 11 11 N 1.31532 * 119.99454 * 10.47932 * 10 8 6 12 12 Si 1.86790 * 120.00084 * 190.48007 * 10 8 6 13 13 H 1.48504 * 109.47024 * 60.00186 * 12 10 8 14 14 H 1.48500 * 109.47194 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47450 * 299.99940 * 12 10 8 16 16 N 1.33059 * 118.92377 * 0.02562 * 5 4 3 17 17 C 1.31705 * 120.69204 * 359.97438 * 16 5 4 18 18 C 1.50696 * 119.08416 * 180.02562 * 17 16 5 19 19 N 1.31834 * 121.84190 * 359.74058 * 17 16 5 20 20 H 1.08999 * 109.47159 * 299.99431 * 1 2 3 21 21 H 1.08993 * 109.47233 * 59.99694 * 1 2 3 22 22 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47247 * 120.00325 * 2 1 3 24 24 H 1.09005 * 109.47519 * 239.99986 * 2 1 3 25 25 H 1.08002 * 120.84192 * 359.96458 * 4 3 2 26 26 H 1.09001 * 109.46745 * 93.79444 * 7 6 5 27 27 H 1.08993 * 109.47004 * 213.78812 * 7 6 5 28 28 H 1.08999 * 109.47283 * 333.78855 * 7 6 5 29 29 H 0.97003 * 120.00075 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47301 * 89.99872 * 18 17 16 31 31 H 1.08993 * 109.47209 * 210.00511 * 18 17 16 32 32 H 1.09001 * 109.46653 * 329.99986 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9098 1.8521 0.9763 5 6 3.3482 3.1776 0.9345 6 7 4.2284 3.6583 1.8899 7 6 4.5952 5.0767 1.9003 8 6 4.7558 2.8079 2.8246 9 1 4.8183 1.7497 2.6176 10 6 5.2102 3.3059 4.0385 11 7 4.9503 4.5499 4.3776 12 14 6.1903 2.2092 5.1899 13 1 7.4259 1.7514 4.5049 14 1 6.5555 2.9732 6.4098 15 1 5.3696 1.0315 5.5700 16 7 2.9065 3.9711 -0.0381 17 6 2.0699 3.5171 -0.9483 18 6 1.5933 4.4471 -2.0340 19 7 1.6421 2.2701 -0.9395 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.2481 1.1814 1.7522 26 1 3.9385 5.6168 2.5823 27 1 5.6284 5.1823 2.2310 28 1 4.4917 5.4862 0.8955 29 1 5.2674 4.8978 5.2258 30 1 2.2720 4.3904 -2.8850 31 1 0.5913 4.1554 -2.3483 32 1 1.5718 5.4685 -1.6539 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:58 Heat of formation + Delta-G solvation = 44.946163 kcal Electronic energy + Delta-G solvation = -14922.609048 eV Core-core repulsion = 12497.216040 eV Total energy + Delta-G solvation = -2425.393008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77871 -36.48439 -34.27587 -32.53319 -30.50215 -30.35519 -27.86627 -26.27482 -24.78693 -23.10316 -21.20378 -20.17955 -17.42111 -16.50276 -15.83989 -14.76271 -14.36723 -14.01684 -13.82737 -13.69396 -13.11291 -13.03574 -12.62599 -12.08552 -11.86598 -11.63636 -11.42231 -11.24112 -11.06473 -10.85967 -10.70982 -10.65952 -10.51470 -9.80399 -9.42095 -9.10007 -8.50486 -7.95872 -7.15368 -6.52242 -4.00996 2.21580 2.53286 3.09408 3.10119 3.11644 3.89103 4.62082 4.67197 4.95418 5.09122 5.22457 5.55167 5.68404 5.75018 6.07581 6.10074 6.17311 6.20529 6.28076 6.39021 6.48874 6.59524 6.66064 6.74885 6.90771 6.93616 7.22666 7.27050 7.54316 7.87828 8.17957 8.56451 9.09871 9.25588 9.67824 10.45795 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.008916 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.585639 B = 3139.607498 C = 3932.161698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C 0.183 3.817 4 C -0.301 4.301 5 C 0.384 3.616 6 N -0.405 5.405 7 C 0.124 3.876 8 C -0.314 4.314 9 H 0.099 0.901 10 C 0.035 3.965 11 N -0.864 5.864 12 Si 0.933 3.067 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.270 1.270 16 N -0.604 5.604 17 C 0.346 3.654 18 C -0.073 4.073 19 N -0.606 5.606 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.127 0.873 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.273 0.727 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -3.683 -4.877 6.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C 0.045 3.955 4 C -0.332 4.332 5 C 0.138 3.862 6 N -0.094 5.094 7 C -0.019 4.019 8 C -0.444 4.444 9 H 0.116 0.884 10 C -0.172 4.172 11 N -0.499 5.499 12 Si 0.759 3.241 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.195 1.195 16 N -0.334 5.334 17 C 0.075 3.925 18 C -0.131 4.131 19 N -0.333 5.333 20 H 0.068 0.932 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.145 0.855 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.234 -2.827 -5.091 6.661 hybrid contribution 0.909 -0.938 1.502 1.990 sum -2.326 -3.765 -3.589 5.698 Atomic orbital electron populations 1.21600 0.94763 1.00641 1.02511 1.20339 0.96411 0.91468 1.02144 1.20906 0.90621 0.94836 0.89116 1.21628 1.08513 0.97674 1.05402 1.18527 0.88341 0.89492 0.89858 1.42474 1.34687 1.08505 1.23755 1.21427 1.00735 0.81032 0.98719 1.19628 1.37784 0.92144 0.94804 0.88361 1.25470 0.97687 0.96847 0.97204 1.70075 1.42215 1.14693 1.22949 0.85882 0.79817 0.79477 0.78937 1.19588 1.20554 1.19468 1.67591 1.19682 1.38951 1.07174 1.22415 0.88799 0.89283 0.92035 1.20333 1.00957 0.97129 0.94725 1.67808 1.32818 1.04107 1.28588 0.93170 0.91727 0.93168 0.90982 0.90822 0.85470 0.92366 0.92208 0.93627 0.91644 0.91049 0.90843 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.78 37.15 0.36 -1.61 16 2 C -0.07 -1.06 6.36 -27.89 -0.18 -1.23 16 3 C 0.18 3.82 6.20 -82.32 -0.51 3.31 16 4 C -0.30 -6.97 8.96 -39.07 -0.35 -7.32 16 5 C 0.38 9.69 7.36 -154.72 -1.14 8.55 16 6 N -0.41 -10.57 3.11 -122.22 -0.38 -10.95 16 7 C 0.12 3.05 8.79 59.85 0.53 3.58 16 8 C -0.31 -8.17 8.95 -15.05 -0.13 -8.30 16 9 H 0.10 2.46 6.40 -52.48 -0.34 2.12 16 10 C 0.03 0.87 5.14 -17.45 -0.09 0.78 16 11 N -0.86 -22.53 10.64 55.49 0.59 -21.94 16 12 Si 0.93 19.36 29.57 -169.99 -5.03 14.33 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 N -0.60 -14.45 9.07 -9.95 -0.09 -14.54 16 17 C 0.35 7.40 7.64 -157.24 -1.20 6.20 16 18 C -0.07 -1.17 10.32 36.00 0.37 -0.80 16 19 N -0.61 -12.86 9.94 -7.06 -0.07 -12.93 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.13 2.87 6.37 -52.49 -0.33 2.53 16 26 H 0.06 1.50 7.41 -51.93 -0.38 1.11 16 27 H 0.06 1.47 7.25 -51.93 -0.38 1.10 16 28 H 0.05 1.05 7.22 -51.93 -0.37 0.68 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -28.66 270.85 -7.54 -36.19 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.30 Total: 2.61 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.34 Total: 3.15 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.05 Total: -60.36 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.66 -7.54 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.140 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds