Wall clock time and date at job start Sun Mar 29 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47307 * 2 1 4 4 C 1.38176 * 120.40054 * 124.99729 * 3 2 1 5 5 C 1.39670 * 118.32156 * 179.97438 * 4 3 2 6 6 N 1.38520 * 120.53832 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99833 * 184.99812 * 6 5 4 8 8 C 1.36929 * 120.00221 * 5.00554 * 6 5 4 9 9 H 1.08005 * 119.99943 * 23.94623 * 8 6 5 10 10 C 1.38858 * 120.00267 * 203.95294 * 8 6 5 11 11 N 1.31532 * 119.99454 * 10.47932 * 10 8 6 12 12 Si 1.86790 * 120.00084 * 190.48007 * 10 8 6 13 13 H 1.48504 * 109.47024 * 60.00186 * 12 10 8 14 14 H 1.48500 * 109.47194 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47450 * 299.99940 * 12 10 8 16 16 N 1.33059 * 118.92377 * 0.02562 * 5 4 3 17 17 C 1.31705 * 120.69204 * 359.97438 * 16 5 4 18 18 C 1.50696 * 119.08416 * 180.02562 * 17 16 5 19 19 N 1.31834 * 121.84190 * 359.74058 * 17 16 5 20 20 H 1.08999 * 109.47159 * 299.99431 * 1 2 3 21 21 H 1.08993 * 109.47233 * 59.99694 * 1 2 3 22 22 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47247 * 120.00325 * 2 1 3 24 24 H 1.09005 * 109.47519 * 239.99986 * 2 1 3 25 25 H 1.08002 * 120.84192 * 359.96458 * 4 3 2 26 26 H 1.09001 * 109.46745 * 93.79444 * 7 6 5 27 27 H 1.08993 * 109.47004 * 213.78812 * 7 6 5 28 28 H 1.08999 * 109.47283 * 333.78855 * 7 6 5 29 29 H 0.97003 * 120.00075 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47301 * 89.99872 * 18 17 16 31 31 H 1.08993 * 109.47209 * 210.00511 * 18 17 16 32 32 H 1.09001 * 109.46653 * 329.99986 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9098 1.8521 0.9763 5 6 3.3482 3.1776 0.9345 6 7 4.2284 3.6583 1.8899 7 6 4.5952 5.0767 1.9003 8 6 4.7558 2.8079 2.8246 9 1 4.8183 1.7497 2.6176 10 6 5.2102 3.3059 4.0385 11 7 4.9503 4.5499 4.3776 12 14 6.1903 2.2092 5.1899 13 1 7.4259 1.7514 4.5049 14 1 6.5555 2.9732 6.4098 15 1 5.3696 1.0315 5.5700 16 7 2.9065 3.9711 -0.0381 17 6 2.0699 3.5171 -0.9483 18 6 1.5933 4.4471 -2.0340 19 7 1.6421 2.2701 -0.9395 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.2481 1.1814 1.7522 26 1 3.9385 5.6168 2.5823 27 1 5.6284 5.1823 2.2310 28 1 4.4917 5.4862 0.8955 29 1 5.2674 4.8978 5.2258 30 1 2.2720 4.3904 -2.8850 31 1 0.5913 4.1554 -2.3483 32 1 1.5718 5.4685 -1.6539 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:57 Heat of formation + Delta-G solvation = 29.361319 kcal Electronic energy + Delta-G solvation = -14923.284858 eV Core-core repulsion = 12497.216040 eV Total energy + Delta-G solvation = -2426.068818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52771 -38.32790 -35.78776 -34.35897 -32.20716 -31.89988 -29.51977 -28.05737 -26.56752 -24.64847 -22.91044 -21.79739 -19.28472 -18.29695 -17.63701 -16.45855 -16.05072 -15.71258 -15.45632 -15.18810 -14.88926 -14.61276 -14.09542 -13.46795 -13.40363 -13.13007 -13.06168 -12.84753 -12.66919 -12.59045 -12.25127 -12.16154 -12.01869 -11.54793 -11.20017 -10.92110 -10.25573 -9.73449 -9.03342 -8.40550 -5.97638 0.49446 0.74672 1.39979 1.47509 1.51781 2.16573 2.81674 2.84234 3.30479 3.44140 3.65689 4.14867 4.35615 4.48555 4.59609 4.68182 4.78977 4.84963 4.85534 4.88987 4.92584 5.04542 5.09222 5.22443 5.23456 5.30288 5.33385 5.44552 5.79048 6.07833 6.35328 6.70281 7.20125 7.42449 7.85497 8.58874 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.008916 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.585639 B = 3139.607498 C = 3932.161698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C 0.189 3.811 4 C -0.327 4.327 5 C 0.368 3.632 6 N -0.431 5.431 7 C 0.144 3.856 8 C -0.339 4.339 9 H 0.100 0.900 10 C -0.008 4.008 11 N -0.897 5.897 12 Si 1.003 2.997 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.263 1.263 16 N -0.624 5.624 17 C 0.333 3.667 18 C -0.068 4.068 19 N -0.602 5.602 20 H 0.037 0.963 21 H 0.057 0.943 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.275 0.725 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -5.213 -5.723 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 C 0.050 3.950 4 C -0.357 4.357 5 C 0.122 3.878 6 N -0.122 5.122 7 C 0.000 4.000 8 C -0.468 4.468 9 H 0.117 0.883 10 C -0.211 4.211 11 N -0.533 5.533 12 Si 0.824 3.176 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.187 1.187 16 N -0.354 5.354 17 C 0.063 3.937 18 C -0.126 4.126 19 N -0.328 5.328 20 H 0.056 0.944 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.144 0.856 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.936 -4.360 -5.977 8.380 hybrid contribution 0.982 -0.486 1.593 1.934 sum -2.954 -4.846 -4.383 7.171 Atomic orbital electron populations 1.21561 0.93166 1.02596 1.01527 1.20508 0.97636 0.88453 1.03723 1.21678 0.88880 0.96863 0.87613 1.21786 1.10040 0.97177 1.06742 1.18989 0.88348 0.90563 0.89864 1.42632 1.36156 1.08713 1.24750 1.21149 0.99502 0.80958 0.98358 1.19897 1.38924 0.92442 0.95490 0.88268 1.26383 0.98243 0.98196 0.98300 1.70184 1.43324 1.16246 1.23514 0.84846 0.78334 0.77680 0.76695 1.18964 1.20167 1.18727 1.67682 1.20708 1.39364 1.07683 1.23507 0.87642 0.90262 0.92296 1.20481 1.02334 0.96262 0.93568 1.68007 1.32311 1.04153 1.28362 0.94399 0.92407 0.89805 0.89712 0.88882 0.85573 0.94378 0.93174 0.92899 0.91500 0.89020 0.88754 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.78 71.98 0.70 -2.67 16 2 C -0.07 -1.93 6.36 29.85 0.19 -1.74 16 3 C 0.19 7.61 6.20 42.44 0.26 7.87 16 4 C -0.33 -15.17 8.96 22.60 0.20 -14.97 16 5 C 0.37 18.81 7.36 133.16 0.98 19.79 16 6 N -0.43 -23.13 3.11 -540.58 -1.68 -24.81 16 7 C 0.14 7.33 8.79 127.77 1.12 8.45 16 8 C -0.34 -18.01 8.95 84.05 0.75 -17.26 16 9 H 0.10 5.06 6.40 -2.91 -0.02 5.04 16 10 C -0.01 -0.41 5.14 84.89 0.44 0.02 16 11 N -0.90 -47.87 10.64 21.65 0.23 -47.64 16 12 Si 1.00 39.76 29.57 68.60 2.03 41.78 16 13 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 14 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 15 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 16 N -0.62 -29.86 9.07 -185.38 -1.68 -31.54 16 17 C 0.33 13.82 7.64 138.76 1.06 14.88 16 18 C -0.07 -2.02 10.32 71.23 0.73 -1.28 16 19 N -0.60 -24.48 9.94 -176.26 -1.75 -26.23 16 20 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.06 1.57 7.98 -2.39 -0.02 1.55 16 22 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.08 2.30 7.93 -2.39 -0.02 2.28 16 24 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.13 5.75 6.37 -2.91 -0.02 5.74 16 26 H 0.04 2.04 7.41 -2.39 -0.02 2.02 16 27 H 0.05 2.57 7.25 -2.39 -0.02 2.55 16 28 H 0.05 2.52 7.22 -2.39 -0.02 2.50 16 29 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -62.06 270.85 4.70 -57.36 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.11 Total: 17.98 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 6.45 Total: 13.10 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -4.88 Total: -130.23 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -62.06 4.70 -57.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.726 kcal (2) G-P(sol) polarization free energy of solvation -62.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds