Wall clock time and date at job start Sun Mar 29 2020 22:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.50706 * 109.47065 * 120.00141 * 2 1 3 5 5 N 1.31817 * 119.07339 * 299.99724 * 4 2 1 6 6 C 1.32539 * 121.02050 * 180.02562 * 5 4 2 7 7 C 1.38172 * 119.19783 * 359.97438 * 6 5 4 8 8 C 1.39672 * 118.31519 * 0.02562 * 7 6 5 9 9 N 1.38524 * 120.53212 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00190 * 185.00029 * 9 8 7 11 11 C 1.36937 * 120.00146 * 4.99911 * 9 8 7 12 12 H 1.07996 * 120.00152 * 23.95195 * 11 9 8 13 13 C 1.38852 * 120.00053 * 203.95247 * 11 9 8 14 14 N 1.31530 * 119.99885 * 10.48614 * 13 11 9 15 15 Si 1.86800 * 119.99971 * 190.48514 * 13 11 9 16 16 H 1.48501 * 109.46965 * 60.00282 * 15 13 11 17 17 H 1.48507 * 109.47089 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47339 * 300.00283 * 15 13 11 19 19 N 1.31703 * 119.07696 * 119.73170 * 4 2 1 20 20 H 1.08998 * 109.47126 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46908 * 59.99855 * 1 2 3 22 22 H 1.09005 * 109.47163 * 300.00443 * 1 2 3 23 23 H 1.09001 * 109.47409 * 240.00004 * 2 1 3 24 24 H 1.08997 * 109.47571 * 60.00021 * 3 2 1 25 25 H 1.09000 * 109.47119 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47294 * 299.99909 * 3 2 1 27 27 H 1.08003 * 120.39970 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.83973 * 180.02562 * 7 6 5 29 29 H 1.08990 * 109.47520 * 93.78533 * 10 9 8 30 30 H 1.08998 * 109.47367 * 213.79236 * 10 9 8 31 31 H 1.09003 * 109.46718 * 333.78632 * 10 9 8 32 32 H 0.97007 * 119.99848 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7028 -0.2444 2.4187 6 6 2.1235 -0.8385 3.5262 7 6 2.9191 -1.9638 3.4269 8 6 3.2496 -2.4312 2.1529 9 7 4.0448 -3.5551 2.0000 10 6 4.4749 -3.9718 0.6629 11 6 4.4291 -4.2766 3.0986 12 1 3.8416 -4.2359 4.0039 13 6 5.5741 -5.0605 3.0487 14 7 6.3996 -4.9546 2.0302 15 14 5.9419 -6.2655 4.4279 16 1 4.8363 -7.2515 4.5317 17 1 7.2137 -6.9757 4.1387 18 1 6.0684 -5.5268 5.7099 19 7 2.7838 -1.7827 1.0885 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.8477 -0.4478 4.4946 28 1 3.2764 -2.4691 4.3120 29 1 5.4545 -3.5456 0.4470 30 1 4.5350 -5.0594 0.6231 31 1 3.7549 -3.6204 -0.0762 32 1 7.1998 -5.5020 1.9955 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260544922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:26 Heat of formation + Delta-G solvation = 31.894205 kcal Electronic energy + Delta-G solvation = -14931.245797 eV Core-core repulsion = 12505.286814 eV Total energy + Delta-G solvation = -2425.958984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51264 -38.40931 -36.06503 -34.41894 -33.00672 -31.15554 -28.51543 -27.93523 -26.46103 -24.89451 -23.36634 -21.40928 -19.29712 -18.20515 -17.86139 -16.62763 -15.96018 -15.86250 -15.51828 -15.12540 -14.90440 -14.74478 -14.23290 -13.63004 -13.36817 -13.04393 -12.87946 -12.75510 -12.66398 -12.33854 -12.16458 -12.05765 -11.74862 -11.72901 -11.11096 -10.99942 -10.41112 -9.73876 -9.03457 -8.40596 -5.97719 0.51904 0.76868 1.40650 1.48190 1.52438 2.16712 2.81108 2.85687 3.34489 3.38727 3.73464 4.23129 4.36243 4.37847 4.42526 4.70165 4.71665 4.89439 4.91292 4.92888 4.99441 5.05481 5.11206 5.20859 5.23853 5.30347 5.43633 5.47837 5.79231 6.05608 6.34497 6.69556 7.19854 7.42061 7.85754 8.58848 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050289 B = 0.007266 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.644294 B = 3852.758076 C = 4174.644817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.026 4.026 3 C -0.127 4.127 4 C 0.345 3.655 5 N -0.600 5.600 6 C 0.166 3.834 7 C -0.326 4.326 8 C 0.365 3.635 9 N -0.431 5.431 10 C 0.144 3.856 11 C -0.340 4.340 12 H 0.102 0.898 13 C -0.008 4.008 14 N -0.898 5.898 15 Si 1.004 2.996 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.263 1.263 19 N -0.622 5.622 20 H 0.037 0.963 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.185 0.815 28 H 0.130 0.870 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 5.662 -0.705 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.046 4.046 3 C -0.185 4.185 4 C 0.074 3.926 5 N -0.324 5.324 6 C 0.007 3.993 7 C -0.357 4.357 8 C 0.119 3.881 9 N -0.123 5.123 10 C 0.000 4.000 11 C -0.468 4.468 12 H 0.120 0.880 13 C -0.211 4.211 14 N -0.533 5.533 15 Si 0.826 3.174 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.187 1.187 19 N -0.351 5.351 20 H 0.056 0.944 21 H 0.107 0.893 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.202 0.798 28 H 0.148 0.852 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.490 5.708 -1.577 8.785 hybrid contribution 1.053 -1.380 1.290 2.163 sum -5.437 4.328 -0.287 6.955 Atomic orbital electron populations 1.21667 0.92027 1.01312 1.03352 1.19991 0.97338 0.96026 0.91276 1.21672 0.99833 0.93584 1.03366 1.23239 0.87718 0.87423 0.94233 1.68113 1.30327 1.35607 0.98399 1.23085 0.88910 0.89238 0.98021 1.21984 1.11871 1.04540 0.97272 1.19016 0.92081 0.86681 0.90314 1.42646 1.42705 1.19605 1.07297 1.21143 0.97460 0.98790 0.82605 1.19929 1.08921 1.23985 0.93993 0.88047 1.26390 0.93879 1.00066 1.00792 1.70186 1.11958 1.39181 1.32012 0.84830 0.77804 0.77474 0.77332 1.18968 1.20260 1.18721 1.67685 1.20460 1.13478 1.33451 0.94372 0.89280 0.91995 0.89929 0.91980 0.94580 0.89240 0.79784 0.85182 0.94397 0.93170 0.93015 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.09 71.98 0.65 -2.60 16 2 C -0.03 -0.81 3.25 -11.54 -0.04 -0.85 16 3 C -0.13 -3.35 9.09 71.98 0.65 -2.69 16 4 C 0.34 14.15 6.34 138.77 0.88 15.03 16 5 N -0.60 -23.74 9.80 -188.08 -1.84 -25.59 16 6 C 0.17 6.39 11.29 84.57 0.95 7.34 16 7 C -0.33 -14.60 9.33 22.60 0.21 -14.39 16 8 C 0.36 18.37 7.36 133.16 0.98 19.35 16 9 N -0.43 -22.94 3.11 -540.59 -1.68 -24.62 16 10 C 0.14 7.30 8.79 127.77 1.12 8.42 16 11 C -0.34 -17.89 8.95 84.04 0.75 -17.14 16 12 H 0.10 5.09 6.40 -2.91 -0.02 5.08 16 13 C -0.01 -0.41 5.14 84.89 0.44 0.02 16 14 N -0.90 -47.78 10.64 21.65 0.23 -47.55 16 15 Si 1.00 39.54 29.57 68.60 2.03 41.57 16 16 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 17 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 N -0.62 -29.60 9.04 -185.38 -1.68 -31.27 16 20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.65 8.01 -2.38 -0.02 1.63 16 23 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 24 H 0.06 1.68 8.01 -2.39 -0.02 1.66 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.19 5.37 8.06 -2.91 -0.02 5.35 16 28 H 0.13 5.68 6.42 -2.91 -0.02 5.66 16 29 H 0.04 2.03 7.41 -2.39 -0.02 2.01 16 30 H 0.05 2.57 7.25 -2.39 -0.02 2.55 16 31 H 0.05 2.47 7.22 -2.39 -0.02 2.45 16 32 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -60.94 269.84 4.77 -56.17 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.10 Total: 18.79 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.61 Total: 12.49 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -4.97 Total: -129.02 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -60.94 4.77 -56.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260544922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.068 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds