Wall clock time and date at job start Sun Mar 29 2020 22:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.31784 * 119.08141 * 60.00463 * 4 2 1 6 6 C 1.32552 * 121.01227 * 180.02562 * 5 4 2 7 7 C 1.38111 * 119.19516 * 359.97438 * 6 5 4 8 8 C 1.39626 * 118.33785 * 359.97438 * 7 6 5 9 9 N 1.38538 * 120.53382 * 180.02562 * 8 7 6 10 10 C 1.46506 * 120.00018 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.47098 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00162 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99841 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00134 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99843 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47086 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46766 * 120.00343 * 15 13 11 18 18 H 1.48492 * 109.46992 * 240.00138 * 15 13 11 19 19 N 1.31750 * 119.08438 * 239.73548 * 4 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08002 * 120.40192 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.83139 * 180.02562 * 7 6 5 29 29 H 0.96995 * 120.00213 * 180.02562 * 9 8 7 30 30 H 1.09000 * 109.47039 * 300.00243 * 10 9 8 31 31 H 1.09002 * 109.46754 * 60.00422 * 10 9 8 32 32 H 0.97008 * 119.99982 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7030 -0.2446 -2.4185 6 6 2.1231 -0.8396 -3.5259 7 6 2.9184 -1.9644 -3.4262 8 6 3.2496 -2.4311 -2.1526 9 7 4.0450 -3.5551 -1.9998 10 6 4.5453 -4.2645 -3.1799 11 6 5.3781 -5.4419 -2.7428 12 1 5.5201 -5.6421 -1.6910 13 6 5.9586 -6.2636 -3.6855 14 7 5.7860 -6.0196 -4.9661 15 14 6.9915 -7.7228 -3.1435 16 1 7.0309 -7.7776 -1.6600 17 1 6.3923 -8.9758 -3.6691 18 1 8.3719 -7.5751 -3.6707 19 7 2.7929 -1.7769 -1.0887 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.8469 -0.4496 -4.4944 28 1 3.2758 -2.4698 -4.3112 29 1 4.2701 -3.8728 -1.1114 30 1 3.7034 -4.6167 -3.7761 31 1 5.1566 -3.5887 -3.7780 32 1 6.1948 -6.5976 -5.6294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:29 Heat of formation + Delta-G solvation = 10.596072 kcal Electronic energy + Delta-G solvation = -14371.225839 eV Core-core repulsion = 11944.343300 eV Total energy + Delta-G solvation = -2426.882540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.86346 -37.86986 -36.04681 -34.93446 -33.63824 -31.24902 -28.95256 -27.97699 -25.78934 -24.75322 -23.91322 -21.22863 -19.50184 -18.36507 -17.76358 -16.73606 -16.21447 -16.11878 -15.72988 -15.30837 -14.88826 -14.78221 -14.48598 -14.05366 -13.72321 -12.97267 -12.92251 -12.82793 -12.62954 -12.27477 -12.17154 -11.99986 -11.79093 -11.55475 -11.39078 -10.87638 -10.57513 -10.11411 -8.94905 -8.35668 -6.49605 0.18115 0.49114 1.40476 1.41307 1.54128 2.18258 2.41595 2.96244 3.01464 3.16635 3.52363 3.91982 4.15049 4.28470 4.28813 4.43079 4.70911 4.77380 4.88560 4.90852 5.00616 5.01691 5.13914 5.17318 5.35940 5.39590 5.46167 5.59851 5.76122 5.89737 6.44197 6.57681 6.84826 7.21802 7.41275 8.76000 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058655 B = 0.005358 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.256188 B = 5224.763105 C = 5510.961818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.027 4.027 3 C -0.130 4.130 4 C 0.348 3.652 5 N -0.571 5.571 6 C 0.180 3.820 7 C -0.316 4.316 8 C 0.419 3.581 9 N -0.694 5.694 10 C 0.272 3.728 11 C -0.562 4.562 12 H 0.070 0.930 13 C 0.016 3.984 14 N -0.922 5.922 15 Si 0.977 3.023 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.605 5.605 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.040 0.960 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.198 0.802 28 H 0.135 0.865 29 H 0.401 0.599 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 10.621 6.546 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.188 4.188 4 C 0.079 3.921 5 N -0.292 5.292 6 C 0.018 3.982 7 C -0.345 4.345 8 C 0.174 3.826 9 N -0.322 5.322 10 C 0.150 3.850 11 C -0.599 4.599 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.560 5.560 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.201 1.201 19 N -0.331 5.331 20 H 0.081 0.919 21 H 0.109 0.891 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.214 0.786 28 H 0.153 0.847 29 H 0.236 0.764 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.689 10.863 6.928 15.004 hybrid contribution 1.183 -1.677 -0.730 2.178 sum -6.506 9.187 6.198 12.851 Atomic orbital electron populations 1.21718 0.91875 1.01597 1.03626 1.20085 0.97437 0.96182 0.91071 1.21716 1.00147 0.93331 1.03624 1.23480 0.87196 0.86945 0.94467 1.68218 1.28121 1.34296 0.98521 1.23332 0.87824 0.88504 0.98504 1.22300 1.10280 1.04398 0.97512 1.19021 0.86772 0.86527 0.90235 1.45131 1.50449 1.25711 1.10901 1.18813 0.92831 0.90504 0.82867 1.21537 1.32574 1.11703 0.94131 0.91182 1.25836 0.97255 1.00810 0.94616 1.70050 1.44767 1.39916 1.01249 0.85214 0.77950 0.77924 0.78803 1.18740 1.20120 1.20115 1.67838 1.19159 1.12966 1.33185 0.91878 0.89147 0.94088 0.89119 0.89153 0.94100 0.91876 0.78559 0.84733 0.76385 0.97638 0.97634 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.09 71.98 0.65 -2.05 16 2 C -0.03 -0.69 3.25 -11.54 -0.04 -0.72 16 3 C -0.13 -2.71 9.09 71.98 0.65 -2.05 16 4 C 0.35 11.76 6.34 138.77 0.88 12.64 16 5 N -0.57 -18.63 9.80 -188.10 -1.84 -20.47 16 6 C 0.18 5.68 11.29 84.55 0.95 6.64 16 7 C -0.32 -12.05 9.40 22.57 0.21 -11.84 16 8 C 0.42 17.59 7.71 133.16 1.03 18.62 16 9 N -0.69 -31.07 5.70 -348.31 -1.99 -33.06 16 10 C 0.27 13.92 4.68 85.63 0.40 14.32 16 11 C -0.56 -30.17 9.28 25.60 0.24 -29.93 16 12 H 0.07 3.61 7.60 -2.91 -0.02 3.59 16 13 C 0.02 0.83 5.46 84.66 0.46 1.29 16 14 N -0.92 -52.18 13.29 21.45 0.28 -51.89 16 15 Si 0.98 41.81 29.54 68.60 2.03 43.83 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 19 N -0.61 -23.72 10.34 -185.44 -1.92 -25.63 16 20 H 0.06 1.36 8.01 -2.39 -0.02 1.34 16 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 1.36 8.01 -2.39 -0.02 1.35 16 27 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.13 5.27 6.87 -2.91 -0.02 5.25 16 29 H 0.40 17.23 8.44 -92.71 -0.78 16.45 16 30 H 0.01 0.32 7.98 -2.39 -0.02 0.30 16 31 H 0.01 0.32 7.97 -2.39 -0.02 0.30 16 32 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -61.10 277.47 2.34 -58.76 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.33 Total: 21.55 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.44 Total: 6.90 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -5.46 Total: -131.05 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -61.10 2.34 -58.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.358 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds