Wall clock time and date at job start Sun Mar 29 2020 22:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38512 * 120.07921 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.01853 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.17586 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.91434 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47083 * 90.00351 * 7 6 5 9 9 C 1.50697 * 109.47411 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99739 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00357 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99692 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47141 * 90.00034 * 13 11 9 15 15 H 1.48507 * 109.47156 * 210.00090 * 13 11 9 16 16 H 1.48497 * 109.47051 * 329.99851 * 13 11 9 17 17 C 1.38222 * 120.16706 * 0.02661 * 6 5 4 18 18 C 1.38725 * 119.97550 * 359.67382 * 17 6 5 19 19 N 1.39968 * 120.08910 * 180.29741 * 18 17 6 20 20 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 21 21 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 23 23 H 1.07995 * 119.99121 * 0.02610 * 4 3 2 24 24 H 1.07991 * 119.91003 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47205 * 210.00396 * 7 6 5 26 26 H 1.08997 * 109.47444 * 330.00720 * 7 6 5 27 27 H 1.09000 * 109.47137 * 300.00087 * 8 7 6 28 28 H 1.09004 * 109.46909 * 59.99614 * 8 7 6 29 29 H 0.97006 * 119.99739 * 180.02562 * 12 11 9 30 30 H 1.08001 * 120.01472 * 179.97438 * 17 6 5 31 31 H 0.96999 * 119.99975 * 180.29498 * 19 18 17 32 32 H 0.96995 * 120.00112 * 0.30390 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6060 -0.0011 6 6 3.3033 3.6812 -0.0005 7 6 3.9828 5.0263 -0.0017 8 6 4.2122 5.4831 1.4404 9 6 4.8922 6.8279 1.4394 10 1 5.1367 7.3086 0.5036 11 6 5.2021 7.4447 2.6328 12 7 4.9048 6.8591 3.7722 13 14 6.0457 9.1114 2.6314 14 1 5.0201 10.1852 2.6288 15 1 6.8925 9.2386 3.8448 16 1 6.8952 9.2352 1.4198 17 6 4.0618 2.5257 0.0000 18 6 3.4376 1.2868 0.0068 19 7 4.2034 0.1152 0.0136 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2152 2.3193 -0.0005 24 1 1.3342 4.5114 -0.0011 25 1 4.9412 4.9488 -0.5151 26 1 3.3524 5.7514 -0.5165 27 1 3.2538 5.5606 1.9538 28 1 4.8425 4.7580 1.9553 29 1 5.1225 7.2933 4.6119 30 1 5.1401 2.5872 0.0000 31 1 3.7656 -0.7503 0.0141 32 1 5.1719 0.1689 0.0180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:11 Heat of formation + Delta-G solvation = -30.539325 kcal Electronic energy + Delta-G solvation = -14354.586777 eV Core-core repulsion = 11893.627721 eV Total energy + Delta-G solvation = -2460.959056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87336 -37.39034 -34.69244 -33.30039 -31.50718 -28.89505 -28.38341 -26.93467 -24.63010 -21.98394 -21.67922 -19.88992 -17.79448 -16.81115 -16.38846 -15.78971 -15.54731 -14.83787 -14.44332 -13.83407 -13.63050 -13.38200 -12.88056 -12.31325 -12.25614 -11.84788 -11.43994 -11.12014 -10.90920 -10.79116 -10.69556 -10.49456 -10.14055 -9.74952 -9.39262 -9.03513 -8.30636 -7.93053 -6.90672 -5.95297 -3.98210 1.84044 2.04799 3.34679 3.40752 3.44190 3.47017 4.17241 4.29101 4.50104 5.06517 5.19687 5.21592 5.40065 5.46158 5.52104 5.72546 5.91339 6.01340 6.11557 6.47871 6.56532 6.74829 6.80527 7.02458 7.27074 7.30061 7.43415 7.74365 7.90030 7.93631 8.05726 8.06444 8.46244 9.09240 9.65527 11.15697 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051492 B = 0.005396 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.641271 B = 5187.932370 C = 5357.609687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.026 3.974 4 C -0.158 4.158 5 C -0.141 4.141 6 C -0.040 4.040 7 C -0.077 4.077 8 C 0.030 3.970 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.166 4.166 18 C 0.193 3.807 19 N -0.880 5.880 20 H 0.050 0.950 21 H 0.091 0.909 22 H 0.051 0.949 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.125 0.875 31 H 0.398 0.602 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -12.712 -7.855 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.243 6.243 3 C -0.021 4.021 4 C -0.178 4.178 5 C -0.161 4.161 6 C -0.041 4.041 7 C -0.115 4.115 8 C -0.007 4.007 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.189 4.189 18 C 0.090 3.910 19 N -0.421 5.421 20 H 0.068 0.932 21 H 0.110 0.890 22 H 0.069 0.931 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.225 0.775 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.285 -12.829 -7.663 16.212 hybrid contribution 0.357 0.764 0.235 0.875 sum -5.928 -12.065 -7.429 15.359 Atomic orbital electron populations 1.22887 0.79237 1.02941 1.01060 1.85890 1.20599 1.27152 1.90639 1.18293 0.90326 0.84458 1.09032 1.20920 0.99036 0.92039 1.05772 1.20653 0.94231 0.96561 1.04644 1.20032 0.93258 0.95857 0.94969 1.20795 0.98462 0.90626 1.01586 1.19070 0.97073 0.95677 0.88903 1.21281 1.38597 1.03759 0.92296 0.92619 1.25021 0.95997 0.97739 0.95669 1.69982 1.47783 1.38418 0.97236 0.86607 0.79556 0.84444 0.77466 1.20688 1.21276 1.19871 1.20386 0.99674 0.89667 1.09148 1.17087 0.87262 0.87738 0.98864 1.42221 1.07932 1.05333 1.86611 0.93180 0.89036 0.93051 0.86168 0.86214 0.92388 0.92278 0.96417 0.96460 0.93047 0.85696 0.77465 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.33 -4.57 9.74 -19.77 -0.19 -4.77 16 3 C 0.03 0.42 6.70 -39.08 -0.26 0.16 16 4 C -0.16 -2.51 9.04 -39.46 -0.36 -2.86 16 5 C -0.14 -2.50 9.69 -39.56 -0.38 -2.88 16 6 C -0.04 -0.78 5.13 -104.62 -0.54 -1.31 16 7 C -0.08 -1.65 5.28 -27.88 -0.15 -1.80 16 8 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 9 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 10 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 13 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.17 -2.95 9.54 -39.41 -0.38 -3.33 16 18 C 0.19 3.15 6.77 -83.56 -0.57 2.59 16 19 N -0.88 -11.31 9.09 32.51 0.30 -11.01 16 20 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 21 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 23 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 24 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 25 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 26 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.40 4.59 8.19 -40.82 -0.33 4.25 16 32 H 0.40 4.30 8.85 -40.82 -0.36 3.94 16 LS Contribution 275.90 15.07 4.16 4.16 Total: -1.00 -32.04 275.90 -6.53 -38.57 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.32 Total: 4.00 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.19 Total: -21.14 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 1.03 Total: -37.62 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.04 -6.53 -38.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.028 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds