Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38512 * 120.07921 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.01853 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.17586 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.91434 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47083 * 90.00351 * 7 6 5 9 9 C 1.50697 * 109.47411 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99739 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00357 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99692 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47141 * 90.00034 * 13 11 9 15 15 H 1.48507 * 109.47156 * 210.00090 * 13 11 9 16 16 H 1.48497 * 109.47051 * 329.99851 * 13 11 9 17 17 C 1.38222 * 120.16706 * 0.02661 * 6 5 4 18 18 C 1.38725 * 119.97550 * 359.67382 * 17 6 5 19 19 N 1.39968 * 120.08910 * 180.29741 * 18 17 6 20 20 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 21 21 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 23 23 H 1.07995 * 119.99121 * 0.02610 * 4 3 2 24 24 H 1.07991 * 119.91003 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47205 * 210.00396 * 7 6 5 26 26 H 1.08997 * 109.47444 * 330.00720 * 7 6 5 27 27 H 1.09000 * 109.47137 * 300.00087 * 8 7 6 28 28 H 1.09004 * 109.46909 * 59.99614 * 8 7 6 29 29 H 0.97006 * 119.99739 * 180.02562 * 12 11 9 30 30 H 1.08001 * 120.01472 * 179.97438 * 17 6 5 31 31 H 0.96999 * 119.99975 * 180.29498 * 19 18 17 32 32 H 0.96995 * 120.00112 * 0.30390 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6060 -0.0011 6 6 3.3033 3.6812 -0.0005 7 6 3.9828 5.0263 -0.0017 8 6 4.2122 5.4831 1.4404 9 6 4.8922 6.8279 1.4394 10 1 5.1367 7.3086 0.5036 11 6 5.2021 7.4447 2.6328 12 7 4.9048 6.8591 3.7722 13 14 6.0457 9.1114 2.6314 14 1 5.0201 10.1852 2.6288 15 1 6.8925 9.2386 3.8448 16 1 6.8952 9.2352 1.4198 17 6 4.0618 2.5257 0.0000 18 6 3.4376 1.2868 0.0068 19 7 4.2034 0.1152 0.0136 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2152 2.3193 -0.0005 24 1 1.3342 4.5114 -0.0011 25 1 4.9412 4.9488 -0.5151 26 1 3.3524 5.7514 -0.5165 27 1 3.2538 5.5606 1.9538 28 1 4.8425 4.7580 1.9553 29 1 5.1225 7.2933 4.6119 30 1 5.1401 2.5872 0.0000 31 1 3.7656 -0.7503 0.0141 32 1 5.1719 0.1689 0.0180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = -51.545071 kcal Electronic energy + Delta-G solvation = -14355.497654 eV Core-core repulsion = 11893.627721 eV Total energy + Delta-G solvation = -2461.869933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07486 -38.60940 -36.16248 -35.09791 -33.27490 -30.43132 -29.56802 -28.15393 -26.42213 -23.49656 -23.19014 -21.44868 -18.93719 -18.50913 -17.98847 -17.07901 -16.55973 -16.47635 -15.98124 -15.18905 -15.10531 -14.64850 -14.42295 -13.93590 -13.91263 -13.40673 -12.87479 -12.80836 -12.67542 -12.23531 -11.96409 -11.92060 -11.68924 -11.62305 -11.22582 -11.04331 -10.53519 -9.27228 -8.19244 -8.09856 -6.29444 0.52680 0.71467 1.41804 1.43565 1.54777 2.43002 2.45208 2.94532 3.07734 3.15428 3.94838 4.11525 4.31938 4.46642 4.50495 4.56222 4.60189 4.76040 4.80126 4.92894 5.04919 5.15703 5.25605 5.47067 5.53212 5.64468 5.86365 5.90779 6.00938 6.25899 6.32797 6.77206 6.87888 7.08726 7.39930 8.94438 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051492 B = 0.005396 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.641271 B = 5187.932370 C = 5357.609687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.334 6.334 3 C 0.027 3.973 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.067 4.067 7 C -0.062 4.062 8 C 0.038 3.962 9 C -0.543 4.543 10 H 0.063 0.937 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.262 1.262 17 C -0.180 4.180 18 C 0.188 3.812 19 N -0.866 5.866 20 H 0.061 0.939 21 H 0.120 0.880 22 H 0.055 0.945 23 H 0.149 0.851 24 H 0.122 0.878 25 H 0.061 0.939 26 H 0.063 0.937 27 H -0.011 1.011 28 H -0.012 1.012 29 H 0.263 0.737 30 H 0.127 0.873 31 H 0.406 0.594 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -13.213 -8.683 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.249 6.249 3 C -0.021 4.021 4 C -0.176 4.176 5 C -0.175 4.175 6 C -0.068 4.068 7 C -0.100 4.100 8 C 0.001 3.999 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.186 1.186 17 C -0.203 4.203 18 C 0.084 3.916 19 N -0.409 5.409 20 H 0.079 0.921 21 H 0.138 0.862 22 H 0.073 0.927 23 H 0.167 0.833 24 H 0.140 0.860 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.236 0.764 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.724 -13.365 -8.510 17.212 hybrid contribution 0.413 0.765 0.498 1.002 sum -6.312 -12.599 -8.011 16.210 Atomic orbital electron populations 1.23238 0.76976 1.05199 1.01755 1.85894 1.22878 1.25860 1.90229 1.18451 0.90478 0.85380 1.07784 1.21176 1.00555 0.91147 1.04673 1.20772 0.93765 0.97725 1.05263 1.19899 0.94135 0.95063 0.97691 1.20517 0.99146 0.92298 0.98015 1.18903 0.94657 0.94623 0.91745 1.21730 1.38816 1.04729 0.92842 0.91858 1.26007 0.96589 1.02126 0.95133 1.70125 1.48946 1.40448 0.98016 0.85419 0.78536 0.79016 0.77900 1.19705 1.20823 1.18565 1.20425 0.99859 0.90084 1.09920 1.17176 0.88027 0.88137 0.98283 1.42180 1.08431 1.04741 1.85534 0.92082 0.86157 0.92675 0.83296 0.85964 0.91990 0.91815 0.99293 0.99375 0.92821 0.85516 0.76440 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -8.45 9.74 -93.65 -0.91 -9.36 16 3 C 0.03 0.83 6.70 22.59 0.15 0.98 16 4 C -0.16 -4.72 9.04 22.35 0.20 -4.52 16 5 C -0.16 -5.49 9.69 22.29 0.22 -5.28 16 6 C -0.07 -2.62 5.13 -19.86 -0.10 -2.73 16 7 C -0.06 -2.73 5.28 29.85 0.16 -2.57 16 8 C 0.04 2.09 4.95 29.85 0.15 2.23 16 9 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 10 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 11 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 12 N -0.94 -58.33 13.29 21.44 0.28 -58.05 16 13 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 17 C -0.18 -6.43 9.54 22.38 0.21 -6.22 16 18 C 0.19 5.96 6.77 38.22 0.26 6.22 16 19 N -0.87 -20.95 9.09 -51.05 -0.46 -21.41 16 20 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 21 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.05 0.90 7.66 -2.39 -0.02 0.88 16 23 H 0.15 3.50 6.30 -2.91 -0.02 3.48 16 24 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 25 H 0.06 2.60 8.08 -2.39 -0.02 2.58 16 26 H 0.06 2.67 8.08 -2.39 -0.02 2.65 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 29 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 30 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.41 8.54 8.19 -92.71 -0.76 7.78 16 32 H 0.40 8.26 8.85 -92.71 -0.82 7.44 16 Total: -1.00 -69.21 275.90 3.54 -65.68 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.45 Total: 17.70 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.05 Total: -41.40 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -0.18 Total: -79.46 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.91 Total: -9.36 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -69.21 3.54 -65.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.131 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds