Wall clock time and date at job start Sun Mar 29 2020 22:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46764 * 174.79408 * 3 2 1 5 5 C 1.37098 * 119.99674 * 83.26609 * 4 3 2 6 6 H 1.08001 * 119.99824 * 166.31404 * 5 4 3 7 7 C 1.38944 * 120.00255 * 346.31480 * 5 4 3 8 8 N 1.31414 * 120.00246 * 359.66160 * 7 5 4 9 9 Si 1.86811 * 120.00096 * 179.65676 * 7 5 4 10 10 H 1.48503 * 109.46963 * 90.00091 * 9 7 5 11 11 H 1.48491 * 109.47271 * 210.00152 * 9 7 5 12 12 H 1.48496 * 109.46887 * 330.00445 * 9 7 5 13 13 C 1.34768 * 119.99795 * 263.26613 * 4 3 2 14 14 O 1.21299 * 119.99750 * 184.54841 * 13 4 3 15 15 C 1.50694 * 120.00378 * 4.55220 * 13 4 3 16 16 H 1.08995 * 109.47248 * 31.31683 * 15 13 4 17 17 C 1.53006 * 109.47004 * 271.31532 * 15 13 4 18 18 C 1.53004 * 109.47340 * 151.31766 * 15 13 4 19 19 C 1.53000 * 117.49903 * 180.02562 * 18 15 13 20 20 C 1.52998 * 60.03164 * 107.47268 * 19 18 15 21 21 H 4.40645 * 5.51407 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.47295 * 54.79454 * 3 2 1 23 23 H 1.09003 * 109.47032 * 294.78859 * 3 2 1 24 24 H 0.97001 * 120.00176 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.47140 * 294.61305 * 17 15 13 26 26 H 1.09000 * 109.46754 * 54.60977 * 17 15 13 27 27 H 1.08999 * 109.47084 * 174.60871 * 17 15 13 28 28 H 1.08994 * 115.56253 * 34.30894 * 18 15 13 29 29 H 1.09000 * 117.49804 * 214.97843 * 19 18 15 30 30 H 1.09003 * 117.49640 * 359.96953 * 19 18 15 31 31 H 1.09006 * 117.49491 * 107.49879 * 20 19 18 32 32 H 1.08993 * 117.49985 * 252.51952 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3765 -0.1253 5 6 3.2305 2.1733 0.9861 6 1 3.7881 3.0971 0.9413 7 6 2.6113 1.7923 2.1702 8 7 1.9272 0.6715 2.2229 9 14 2.7512 2.8734 3.6873 10 1 1.6310 3.8481 3.7055 11 1 2.6906 2.0267 4.9057 12 1 4.0432 3.6047 3.6564 13 6 3.4870 1.8587 -1.3332 14 8 3.9680 2.9684 -1.4261 15 6 3.2846 1.0194 -2.5683 16 1 2.4131 0.3789 -2.4334 17 6 4.5231 0.1526 -2.8045 18 6 3.0639 1.9333 -3.7754 19 6 2.8372 1.2670 -5.1339 20 6 1.6708 1.9421 -4.4097 21 1 -1.0503 -0.0005 -0.0001 22 1 3.0096 -0.5916 -0.8397 23 1 3.0095 -0.4301 0.9330 24 1 1.4946 0.4057 3.0495 25 1 5.3756 0.7920 -3.0341 26 1 4.7361 -0.4288 -1.9075 27 1 4.3399 -0.5227 -3.6402 28 1 3.6164 2.8727 -3.7613 29 1 3.2410 1.7678 -6.0138 30 1 2.8458 0.1775 -5.1677 31 1 1.3072 2.8872 -4.8132 32 1 0.9122 1.2969 -3.9668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300785376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:27 Heat of formation + Delta-G solvation = 38.927715 kcal Electronic energy + Delta-G solvation = -15261.820164 eV Core-core repulsion = 12803.873425 eV Total energy + Delta-G solvation = -2457.946739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88527 -38.27806 -37.01556 -34.02924 -33.10931 -32.56046 -28.27922 -26.89606 -25.39101 -23.11716 -22.22485 -20.01523 -19.71823 -18.47140 -18.09100 -16.86999 -16.17923 -15.90561 -15.55254 -15.16084 -14.58877 -14.44008 -14.16610 -13.55488 -13.13021 -13.03720 -12.88833 -12.78431 -12.47361 -12.25675 -12.16559 -11.74559 -11.40325 -11.22043 -10.95937 -10.84279 -10.49425 -10.19400 -9.85571 -8.21176 -5.93289 1.34829 1.39027 1.50648 1.92563 2.14302 2.33706 2.49392 2.92186 3.11552 3.21805 3.79273 3.89511 3.99391 4.11877 4.22052 4.40293 4.54173 4.64202 4.71171 4.80122 4.93015 4.99282 5.09628 5.19452 5.29121 5.31877 5.43914 5.44463 5.50336 6.05688 6.47770 7.15357 7.22627 7.45365 7.99841 8.67347 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034163 B = 0.009391 C = 0.008464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.403874 B = 2981.009758 C = 3307.172929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.128 4.128 3 C 0.235 3.765 4 N -0.459 5.459 5 C -0.342 4.342 6 H 0.074 0.926 7 C -0.002 4.002 8 N -0.881 5.881 9 Si 0.989 3.011 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.274 1.274 13 C 0.448 3.552 14 O -0.632 6.632 15 C -0.064 4.064 16 H 0.086 0.914 17 C -0.131 4.131 18 C -0.159 4.159 19 C -0.144 4.144 20 C -0.188 4.188 21 H 0.228 0.772 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.270 0.730 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -5.593 -8.387 10.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.130 4.130 3 C 0.113 3.887 4 N -0.176 5.176 5 C -0.470 4.470 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.519 5.519 9 Si 0.813 3.187 10 H -0.206 1.206 11 H -0.192 1.192 12 H -0.199 1.199 13 C 0.238 3.762 14 O -0.519 6.519 15 C -0.086 4.086 16 H 0.105 0.895 17 C -0.188 4.188 18 C -0.178 4.178 19 C -0.180 4.180 20 C -0.225 4.225 21 H 0.245 0.755 22 H 0.108 0.892 23 H 0.122 0.878 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.714 -5.177 -8.228 9.747 hybrid contribution -0.291 0.871 1.236 1.540 sum -1.006 -4.306 -6.992 8.273 Atomic orbital electron populations 1.25017 0.96288 1.01016 1.06877 1.23395 0.94926 0.99326 0.95350 1.18589 0.84669 0.83053 1.02425 1.43947 1.55911 1.11780 1.06010 1.19655 1.32879 1.05052 0.89427 0.90815 1.25956 0.94883 0.98187 1.01293 1.70048 1.32258 1.21818 1.27819 0.85000 0.78315 0.77938 0.77457 1.20639 1.19158 1.19899 1.20992 0.82510 0.87552 0.85102 1.90443 1.50825 1.23906 1.86756 1.20694 1.01010 0.96076 0.90808 0.89542 1.21712 0.95435 0.98825 1.02855 1.21981 1.01369 1.00750 0.93700 1.23046 1.00363 1.00896 0.93712 1.23091 0.91507 1.03142 1.04711 0.75506 0.89201 0.87807 0.91884 0.92929 0.92454 0.88537 0.89631 0.87200 0.86881 0.88624 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.28 19.24 74.32 1.43 -9.85 16 2 C -0.13 -5.81 10.71 31.13 0.33 -5.48 16 3 C 0.23 10.63 4.86 84.57 0.41 11.04 16 4 N -0.46 -24.06 2.60 -645.41 -1.68 -25.74 16 5 C -0.34 -19.75 9.47 84.04 0.80 -18.95 16 6 H 0.07 4.58 7.23 -2.91 -0.02 4.56 16 7 C 0.00 -0.11 5.36 84.92 0.45 0.34 16 8 N -0.88 -45.67 7.99 21.66 0.17 -45.50 16 9 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.45 22.54 6.69 87.66 0.59 23.13 16 14 O -0.63 -36.89 15.49 -3.09 -0.05 -36.93 16 15 C -0.06 -2.39 2.02 -11.54 -0.02 -2.41 16 16 H 0.09 3.08 6.31 -2.39 -0.02 3.06 16 17 C -0.13 -3.89 8.66 71.98 0.62 -3.27 16 18 C -0.16 -5.41 4.99 -10.77 -0.05 -5.47 16 19 C -0.14 -3.38 9.79 30.59 0.30 -3.08 16 20 C -0.19 -5.36 10.18 30.62 0.31 -5.05 16 21 H 0.23 7.41 7.80 -4.40 -0.03 7.37 16 22 H 0.09 3.35 5.18 -2.39 -0.01 3.34 16 23 H 0.10 5.04 6.35 -2.39 -0.02 5.02 16 24 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 25 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.06 1.71 7.14 -2.39 -0.02 1.69 16 27 H 0.10 2.11 7.49 -2.39 -0.02 2.09 16 28 H 0.09 3.41 7.35 -2.39 -0.02 3.39 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.11 2.21 7.67 -2.39 -0.02 2.19 16 31 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 Total: -1.00 -67.57 272.23 6.74 -60.82 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.10 Total: 20.96 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 5.17 Total: -19.06 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.51 Total: -71.23 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.05 Total: -36.93 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.57 6.74 -60.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300785376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.750 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds