Wall clock time and date at job start Sun Mar 29 2020 22:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47371 * 353.49943 * 3 2 1 5 5 C 1.37105 * 119.99933 * 87.78025 * 4 3 2 6 6 H 1.07996 * 119.99870 * 310.92992 * 5 4 3 7 7 C 1.38953 * 120.00215 * 130.93231 * 5 4 3 8 8 N 1.31401 * 120.00238 * 161.30085 * 7 5 4 9 9 Si 1.86800 * 119.99762 * 341.30531 * 7 5 4 10 10 H 1.48496 * 109.47269 * 94.45909 * 9 7 5 11 11 H 1.48505 * 109.47275 * 214.46154 * 9 7 5 12 12 H 1.48502 * 109.47073 * 334.45915 * 9 7 5 13 13 C 1.34768 * 120.00229 * 267.78088 * 4 3 2 14 14 O 1.21302 * 120.00228 * 183.34652 * 13 4 3 15 15 C 1.50702 * 120.00268 * 3.33950 * 13 4 3 16 16 H 1.09000 * 109.47039 * 324.96064 * 15 13 4 17 17 C 1.53001 * 109.46628 * 84.95532 * 15 13 4 18 18 C 1.52992 * 109.47746 * 204.95455 * 15 13 4 19 19 C 1.52999 * 117.49906 * 180.02562 * 18 15 13 20 20 C 1.53002 * 60.00243 * 252.51332 * 19 18 15 21 21 H 4.40638 * 5.51447 * 179.97438 * 4 1 2 22 22 H 1.09002 * 109.47333 * 233.49745 * 3 2 1 23 23 H 1.09002 * 109.46961 * 113.50071 * 3 2 1 24 24 H 0.96998 * 120.00192 * 179.97438 * 8 7 5 25 25 H 1.09002 * 109.47012 * 182.81211 * 17 15 13 26 26 H 1.09008 * 109.47234 * 302.80944 * 17 15 13 27 27 H 1.08999 * 109.47349 * 62.80958 * 17 15 13 28 28 H 1.09003 * 115.56259 * 325.69645 * 18 15 13 29 29 H 1.09003 * 117.49822 * 145.02834 * 19 18 15 30 30 H 1.08993 * 117.50101 * 359.97438 * 19 18 15 31 31 H 1.08995 * 117.50189 * 107.48898 * 20 19 18 32 32 H 1.09003 * 117.49810 * 252.49504 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3714 0.1564 5 6 3.3205 -2.1630 -0.9476 6 1 2.5396 -2.2475 -1.6889 7 6 4.5131 -2.8567 -1.1126 8 7 4.5708 -3.8770 -1.9386 9 14 6.0343 -2.3388 -0.1602 10 1 6.1369 -3.1430 1.0840 11 1 7.2415 -2.5629 -0.9955 12 1 5.9338 -0.8987 0.1881 13 6 3.4024 -1.8555 1.3853 14 8 3.8646 -2.9700 1.5108 15 6 3.1275 -1.0123 2.6037 16 1 3.3253 0.0345 2.3732 17 6 1.6635 -1.1757 3.0171 18 6 4.0345 -1.4622 3.7507 19 6 3.9058 -0.7237 5.0845 20 6 5.1345 -0.4987 4.2010 21 1 -1.0498 -0.0004 0.0002 22 1 3.0091 0.6121 0.8261 23 1 3.0091 0.4106 -0.9425 24 1 5.4035 -4.3610 -2.0541 25 1 1.4517 -0.5279 3.8678 26 1 1.0176 -0.9024 2.1826 27 1 1.4781 -2.2131 3.2954 28 1 4.2545 -2.5292 3.7856 29 1 4.0414 -1.3048 5.9966 30 1 3.1752 0.0829 5.1447 31 1 5.2120 0.4556 3.6801 32 1 6.0785 -0.9316 4.5321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300785377.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:30 Heat of formation + Delta-G solvation = 34.460070 kcal Electronic energy + Delta-G solvation = -15431.416138 eV Core-core repulsion = 12973.275668 eV Total energy + Delta-G solvation = -2458.140470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13934 -38.29894 -36.83941 -34.71360 -33.25231 -32.78832 -28.48263 -26.86976 -25.30688 -23.13868 -22.34982 -20.40433 -19.72005 -18.74695 -17.79742 -17.21518 -16.46222 -15.96035 -15.53359 -15.12402 -14.80256 -14.62347 -14.37566 -13.98627 -13.55774 -13.21084 -13.05897 -12.89147 -12.44802 -12.28872 -12.06236 -11.86711 -11.38986 -11.23781 -10.94320 -10.84918 -10.79431 -10.27749 -9.67742 -8.46221 -6.28314 1.20188 1.33433 1.44360 1.76418 1.97807 2.01145 2.37950 2.73177 2.93891 3.11583 3.63652 3.73496 3.86003 4.03084 4.11211 4.24182 4.50527 4.53150 4.63066 4.74724 4.77649 4.90558 4.97053 5.05570 5.17466 5.26408 5.29313 5.39997 5.68809 5.87522 6.71248 6.80628 6.89500 7.28196 7.85660 8.64642 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.014922 C = 0.009995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.171122 B = 1875.948224 C = 2800.747660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.221 4.221 3 C 0.199 3.801 4 N -0.479 5.479 5 C -0.346 4.346 6 H 0.057 0.943 7 C 0.047 3.953 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.283 1.283 11 H -0.294 1.294 12 H -0.248 1.248 13 C 0.464 3.536 14 O -0.589 6.589 15 C -0.070 4.070 16 H 0.108 0.892 17 C -0.131 4.131 18 C -0.170 4.170 19 C -0.143 4.143 20 C -0.187 4.187 21 H 0.249 0.751 22 H 0.119 0.881 23 H 0.101 0.899 24 H 0.273 0.727 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 12.857 11.834 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.223 4.223 3 C 0.077 3.923 4 N -0.202 5.202 5 C -0.474 4.474 6 H 0.075 0.925 7 C -0.157 4.157 8 N -0.549 5.549 9 Si 0.777 3.223 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.171 1.171 13 C 0.255 3.745 14 O -0.472 6.472 15 C -0.091 4.091 16 H 0.126 0.874 17 C -0.188 4.188 18 C -0.189 4.189 19 C -0.179 4.179 20 C -0.223 4.223 21 H 0.265 0.735 22 H 0.137 0.863 23 H 0.119 0.881 24 H 0.082 0.918 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.465 12.168 11.775 17.283 hybrid contribution 0.624 -0.708 -0.388 1.021 sum -2.841 11.459 11.387 16.403 Atomic orbital electron populations 1.25620 0.96577 0.98278 1.00452 1.23908 0.95494 1.01937 1.00926 1.18845 0.84560 0.84361 1.04528 1.43779 1.60400 1.11506 1.04475 1.18595 1.00700 1.26491 1.01571 0.92537 1.26011 1.01215 0.93570 0.94940 1.69840 1.28289 1.17981 1.38830 0.85675 0.78169 0.80018 0.78394 1.20997 1.22178 1.17130 1.21513 0.79867 0.87534 0.85566 1.90514 1.47357 1.23193 1.86109 1.20868 0.97989 0.99439 0.90826 0.87415 1.21709 0.92235 1.02202 1.02681 1.22040 1.02463 0.97929 0.96472 1.23042 0.99742 1.02454 0.92691 1.23163 0.93927 1.00707 1.04544 0.73502 0.86324 0.88090 0.91753 0.88367 0.92060 0.94041 0.90221 0.87710 0.86354 0.87606 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.39 18.65 74.32 1.39 -4.01 16 2 C -0.22 -7.45 11.76 31.13 0.37 -7.08 16 3 C 0.20 7.16 5.68 84.57 0.48 7.64 16 4 N -0.48 -23.17 1.99 -645.41 -1.28 -24.45 16 5 C -0.35 -20.46 9.58 84.04 0.80 -19.65 16 6 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 7 C 0.05 2.88 4.85 84.93 0.41 3.29 16 8 N -0.91 -58.85 13.96 21.66 0.30 -58.55 16 9 Si 0.95 50.37 25.20 68.60 1.73 52.10 16 10 H -0.28 -16.13 6.55 99.48 0.65 -15.48 16 11 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.25 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.46 22.14 5.15 87.66 0.45 22.59 16 14 O -0.59 -34.06 12.06 -3.10 -0.04 -34.09 16 15 C -0.07 -2.38 2.23 -11.54 -0.03 -2.40 16 16 H 0.11 3.02 5.74 -2.39 -0.01 3.01 16 17 C -0.13 -3.80 8.97 71.98 0.65 -3.16 16 18 C -0.17 -5.50 4.96 -10.79 -0.05 -5.55 16 19 C -0.14 -3.09 9.77 30.59 0.30 -2.79 16 20 C -0.19 -4.80 10.18 30.60 0.31 -4.49 16 21 H 0.25 4.64 7.80 -4.43 -0.03 4.61 16 22 H 0.12 3.33 5.81 -2.39 -0.01 3.31 16 23 H 0.10 3.53 8.06 -2.39 -0.02 3.51 16 24 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 25 H 0.10 2.04 7.39 -2.39 -0.02 2.02 16 26 H 0.06 1.84 5.30 -2.38 -0.01 1.83 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 3.18 7.33 -2.39 -0.02 3.16 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.12 1.98 7.63 -2.39 -0.02 1.96 16 31 H 0.11 2.41 8.05 -2.39 -0.02 2.39 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.43 269.64 6.84 -70.59 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.05 Total: 10.01 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.08 Total: -15.60 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -0.98 Total: -83.00 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.04 Total: -34.09 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.73 Total: 52.10 kcal Total: -77.43 6.84 -70.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300785377.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.050 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds