Wall clock time and date at job start Sun Mar 29 2020 21:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46947 * 169.39548 * 3 2 1 5 5 C 1.37093 * 119.99999 * 271.94439 * 4 3 2 6 6 H 1.08010 * 119.99662 * 186.44430 * 5 4 3 7 7 C 1.38948 * 120.00444 * 6.44138 * 5 4 3 8 8 N 1.31415 * 119.99832 * 28.96938 * 7 5 4 9 9 Si 1.86794 * 120.00160 * 208.96553 * 7 5 4 10 10 H 1.48495 * 109.47412 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47017 * 120.00365 * 9 7 5 12 12 H 1.48503 * 109.47184 * 239.99860 * 9 7 5 13 13 C 1.34779 * 119.99840 * 91.94816 * 4 3 2 14 14 O 1.21284 * 120.00286 * 180.27211 * 13 4 3 15 15 C 1.50706 * 119.99978 * 359.97438 * 13 4 3 16 16 C 1.54268 * 110.03247 * 297.91130 * 15 13 4 17 17 C 1.54963 * 104.15873 * 217.13638 * 16 15 13 18 18 C 1.54883 * 102.77874 * 37.88747 * 17 16 15 19 19 C 1.53872 * 110.03300 * 180.69227 * 15 13 4 20 20 H 4.40637 * 5.51467 * 179.97438 * 4 1 2 21 21 H 1.08998 * 109.47410 * 49.39905 * 3 2 1 22 22 H 1.08995 * 109.47142 * 289.39963 * 3 2 1 23 23 H 0.96992 * 120.00066 * 179.97438 * 8 7 5 24 24 H 1.09002 * 110.01363 * 59.30118 * 15 13 4 25 25 H 1.09007 * 110.48472 * 335.78286 * 16 15 13 26 26 H 1.09000 * 110.48468 * 98.42394 * 16 15 13 27 27 H 1.08998 * 110.71551 * 279.57014 * 17 16 15 28 28 H 1.09005 * 110.92100 * 156.29355 * 17 16 15 29 29 H 1.09003 * 110.48818 * 203.40535 * 18 17 16 30 30 H 1.08997 * 110.60207 * 80.81781 * 18 17 16 31 31 H 1.08996 * 110.03222 * 238.56899 * 19 15 13 32 32 H 1.09006 * 110.03037 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3585 -0.2542 5 6 3.3240 1.7887 -1.5419 6 1 3.7807 2.7496 -1.7283 7 6 2.9294 0.9886 -2.6072 8 7 1.9226 0.1560 -2.4659 9 14 3.8300 1.0966 -4.2401 10 1 4.9171 2.1033 -4.1403 11 1 4.4110 -0.2287 -4.5736 12 1 2.8774 1.5015 -5.3050 13 6 3.3953 2.1848 0.7780 14 8 3.7944 3.3106 0.5675 15 6 3.1856 1.7121 2.1935 16 6 1.6987 1.3704 2.4218 17 6 1.4209 1.8375 3.8730 18 6 2.2495 3.1419 3.9776 19 6 3.5360 2.8376 3.1825 20 1 -1.0502 -0.0004 -0.0001 21 1 3.0097 -0.6679 -0.7802 22 1 3.0095 -0.3405 0.9693 23 1 1.6469 -0.4023 -3.2097 24 1 3.8044 0.8365 2.3899 25 1 1.0696 1.9161 1.7185 26 1 1.5352 0.2968 2.3278 27 1 1.7739 1.0970 4.5906 28 1 0.3601 2.0409 4.0201 29 1 2.4871 3.3604 5.0187 30 1 1.7108 3.9756 3.5272 31 1 4.3241 2.5080 3.8594 32 1 3.8572 3.7260 2.6386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300831057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:07 Heat of formation + Delta-G solvation = 5.069515 kcal Electronic energy + Delta-G solvation = -15478.427814 eV Core-core repulsion = 13019.012873 eV Total energy + Delta-G solvation = -2459.414940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02237 -38.00279 -37.05209 -34.01788 -33.04117 -30.23605 -29.42217 -28.12526 -26.48042 -22.59028 -21.52937 -19.98328 -19.65624 -18.30155 -18.21399 -16.76008 -16.45348 -16.02875 -15.65488 -15.22916 -14.49682 -14.26095 -14.06714 -13.80141 -13.61621 -12.84549 -12.57018 -12.38389 -12.23380 -12.03168 -11.93036 -11.76862 -11.63714 -11.35229 -11.10916 -10.91094 -10.53018 -10.20179 -9.90238 -8.35960 -5.85141 1.31919 1.41048 1.54409 1.90790 2.17924 2.35742 2.45906 2.99321 3.23162 3.70884 3.82366 3.94092 3.98564 4.34597 4.50877 4.57017 4.64136 4.74219 4.80137 4.88471 4.97780 5.09027 5.13683 5.26449 5.36323 5.46638 5.48256 5.50112 5.54276 6.04265 6.45674 7.15755 7.22590 7.45613 8.02921 8.61461 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037422 B = 0.010071 C = 0.008376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.052926 B = 2779.698755 C = 3342.198642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.136 4.136 3 C 0.233 3.767 4 N -0.451 5.451 5 C -0.362 4.362 6 H 0.071 0.929 7 C 0.009 3.991 8 N -0.858 5.858 9 Si 0.975 3.025 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.279 1.279 13 C 0.437 3.563 14 O -0.634 6.634 15 C -0.101 4.101 16 C -0.105 4.105 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.116 4.116 20 H 0.228 0.772 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.273 0.727 24 H 0.104 0.896 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -4.201 9.917 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.137 4.137 3 C 0.110 3.890 4 N -0.168 5.168 5 C -0.489 4.489 6 H 0.089 0.911 7 C -0.195 4.195 8 N -0.495 5.495 9 Si 0.799 3.201 10 H -0.203 1.203 11 H -0.187 1.187 12 H -0.205 1.205 13 C 0.228 3.772 14 O -0.523 6.523 15 C -0.123 4.123 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.154 4.154 20 H 0.245 0.755 21 H 0.105 0.895 22 H 0.116 0.884 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.455 -3.824 9.663 10.494 hybrid contribution 0.115 0.287 -1.502 1.534 sum -1.341 -3.538 8.161 8.995 Atomic orbital electron populations 1.24989 0.96199 1.00417 1.05526 1.23130 0.94599 0.99850 0.96143 1.18409 0.85074 0.84537 1.00943 1.43956 1.55913 1.11639 1.05326 1.19510 1.41281 1.05722 0.82393 0.91079 1.25836 0.95222 0.96412 1.02069 1.70270 1.20465 1.24909 1.33819 0.85190 0.78566 0.78568 0.77788 1.20341 1.18739 1.20516 1.21031 0.82755 0.85113 0.88283 1.90425 1.53544 1.22110 1.86183 1.21858 0.99347 1.00431 0.90634 1.22458 0.92818 1.01296 0.97776 1.22515 1.00290 0.97171 0.95011 1.22336 0.95210 0.97663 1.00403 1.22119 0.99107 0.97666 0.96542 0.75518 0.89465 0.88377 0.91684 0.87758 0.94666 0.90170 0.88960 0.90683 0.89065 0.93608 0.89614 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.01 18.99 74.32 1.41 -8.60 16 2 C -0.14 -5.90 8.09 31.13 0.25 -5.65 16 3 C 0.23 10.28 4.75 84.57 0.40 10.68 16 4 N -0.45 -23.60 2.59 -645.41 -1.67 -25.26 16 5 C -0.36 -20.98 9.40 84.04 0.79 -20.19 16 6 H 0.07 4.52 7.33 -2.91 -0.02 4.50 16 7 C 0.01 0.49 4.82 84.93 0.41 0.89 16 8 N -0.86 -44.62 9.28 21.66 0.20 -44.42 16 9 Si 0.97 42.52 29.64 68.60 2.03 44.56 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.44 22.14 6.87 87.66 0.60 22.74 16 14 O -0.63 -37.48 14.79 -3.04 -0.05 -37.52 16 15 C -0.10 -3.74 2.41 -10.81 -0.03 -3.77 16 16 C -0.11 -3.49 4.18 31.70 0.13 -3.36 16 17 C -0.11 -2.78 6.91 31.91 0.22 -2.56 16 18 C -0.12 -3.20 6.83 31.67 0.22 -2.98 16 19 C -0.12 -3.85 6.40 31.32 0.20 -3.65 16 20 H 0.23 7.12 7.80 -4.41 -0.03 7.08 16 21 H 0.09 4.09 6.43 -2.39 -0.02 4.08 16 22 H 0.10 3.53 5.73 -2.39 -0.01 3.51 16 23 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 24 H 0.10 3.30 7.38 -2.39 -0.02 3.29 16 25 H 0.03 1.42 7.09 -2.38 -0.02 1.40 16 26 H 0.08 2.46 6.12 -2.39 -0.01 2.45 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.12 6.39 -2.38 -0.02 2.11 16 Total: -1.00 -68.49 260.56 6.23 -62.25 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.10 Total: 16.86 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.61 Total: -16.46 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.47 Total: -69.69 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.05 Total: -37.52 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.56 kcal Total: -68.49 6.23 -62.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300831057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.321 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds