Wall clock time and date at job start Sun Mar 29 2020 21:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46820 * 48.03564 * 3 2 1 5 5 C 1.37093 * 119.99774 * 264.13587 * 4 3 2 6 6 H 1.08005 * 119.99786 * 197.43756 * 5 4 3 7 7 C 1.38946 * 120.00302 * 17.43547 * 5 4 3 8 8 N 1.31411 * 120.00146 * 21.53396 * 7 5 4 9 9 Si 1.86799 * 120.00147 * 201.53253 * 7 5 4 10 10 H 1.48507 * 109.46901 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47101 * 119.99800 * 9 7 5 12 12 H 1.48497 * 109.47435 * 240.00293 * 9 7 5 13 13 C 1.34778 * 119.99898 * 84.14394 * 4 3 2 14 14 O 1.21289 * 119.99893 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99923 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.46766 * 180.02562 * 15 13 4 17 17 C 1.53778 * 113.61446 * 85.86755 * 16 15 13 18 18 C 1.54053 * 86.98931 * 140.01673 * 17 16 15 19 19 C 1.53784 * 113.61098 * 183.47291 * 16 15 13 20 20 H 4.40645 * 5.51424 * 180.02562 * 4 1 2 21 21 H 1.08994 * 109.47022 * 288.03612 * 3 2 1 22 22 H 1.08995 * 109.46737 * 168.03761 * 3 2 1 23 23 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 24 24 H 1.08996 * 109.47028 * 60.00311 * 15 13 4 25 25 H 1.08997 * 109.47551 * 300.00577 * 15 13 4 26 26 H 1.08993 * 112.85330 * 314.66813 * 16 15 13 27 27 H 1.08997 * 113.61342 * 254.60917 * 17 16 15 28 28 H 1.09004 * 113.61322 * 25.51514 * 17 16 15 29 29 H 1.09000 * 113.62034 * 220.02641 * 18 17 16 30 30 H 1.08997 * 113.61529 * 89.11268 * 18 17 16 31 31 H 1.09001 * 113.61595 * 334.48012 * 19 16 15 32 32 H 1.09002 * 113.61423 * 105.30262 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.9227 -1.0271 5 6 3.4781 -2.2059 -0.6878 6 1 4.0909 -2.7950 -1.3540 7 6 3.0379 -2.7484 0.5132 8 7 1.9862 -2.2418 1.1168 9 14 3.9409 -4.1980 1.2700 10 1 5.0836 -4.5778 0.4008 11 1 4.4464 -3.8194 2.6140 12 1 3.0111 -5.3489 1.3969 13 6 3.2469 -0.5107 -2.3054 14 8 3.6519 -1.2750 -3.1556 15 6 2.8690 0.8997 -2.6783 16 6 3.0879 1.1065 -4.1784 17 6 1.8904 0.6747 -5.0410 18 6 2.1599 1.9264 -5.8977 19 6 2.8109 2.5442 -4.6488 20 1 -1.0499 0.0000 -0.0003 21 1 3.0095 -0.3173 0.9771 22 1 3.0089 1.0061 -0.2130 23 1 1.6787 -2.6209 1.9551 24 1 3.4886 1.6015 -2.1202 25 1 1.8198 1.0705 -2.4377 26 1 4.0418 0.7097 -4.5256 27 1 2.0511 -0.2630 -5.5730 28 1 0.9378 0.7046 -4.5120 29 1 1.2534 2.4405 -6.2171 30 1 2.8602 1.7537 -6.7149 31 1 2.1095 3.0843 -4.0128 32 1 3.7143 3.1153 -4.8629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300904765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:14 Heat of formation + Delta-G solvation = 43.426467 kcal Electronic energy + Delta-G solvation = -15036.411088 eV Core-core repulsion = 12578.659429 eV Total energy + Delta-G solvation = -2457.751658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14102 -37.68518 -35.03909 -32.14615 -31.17142 -29.70469 -26.39248 -25.26703 -24.79299 -22.75607 -19.21565 -18.71423 -17.83409 -16.55757 -15.99173 -15.32883 -14.50332 -14.43941 -14.14588 -13.78866 -12.98675 -12.61146 -12.19864 -12.13075 -11.95642 -11.56786 -11.28748 -11.05811 -10.89614 -10.45987 -10.34980 -10.19043 -9.90749 -9.77078 -9.32788 -9.23291 -8.86114 -8.30647 -7.81114 -6.29254 -3.81010 3.15861 3.27601 3.34525 3.72716 3.97673 4.08486 4.21817 4.83496 4.96755 5.03911 5.08958 5.16807 5.33665 5.51709 5.81543 5.85496 5.93639 6.02766 6.04798 6.11800 6.24983 6.34691 6.41121 6.48640 6.66710 6.78458 6.93325 7.05462 7.60379 8.11669 8.48251 8.83119 9.19623 9.42213 9.98893 10.71949 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.008263 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.674296 B = 3387.646974 C = 3847.939109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.446 5.446 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.454 3.546 14 O -0.583 6.583 15 C -0.124 4.124 16 C -0.087 4.087 17 C -0.131 4.131 18 C -0.143 4.143 19 C -0.140 4.140 20 H 0.198 0.802 21 H 0.109 0.891 22 H 0.062 0.938 23 H 0.266 0.734 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 8.712 -3.816 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.112 4.112 3 C 0.109 3.891 4 N -0.165 5.165 5 C -0.441 4.441 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.745 3.255 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.243 3.757 14 O -0.467 6.467 15 C -0.164 4.164 16 C -0.105 4.105 17 C -0.169 4.169 18 C -0.180 4.180 19 C -0.178 4.178 20 H 0.216 0.784 21 H 0.126 0.874 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.446 8.270 -4.050 9.219 hybrid contribution -0.124 -0.819 0.731 1.105 sum -0.571 7.451 -3.319 8.177 Atomic orbital electron populations 1.24259 0.95370 1.05189 1.03504 1.23226 0.94395 0.96036 0.97567 1.18248 0.84216 0.91408 0.95271 1.43747 1.56358 1.11277 1.05080 1.19696 1.30021 0.90081 1.04309 0.87894 1.25267 0.95240 0.98958 0.97951 1.70099 1.19870 1.42325 1.17992 0.85994 0.79757 0.80835 0.78902 1.19264 1.20658 1.20963 1.20149 0.83754 0.89531 0.82307 1.90498 1.50907 1.56926 1.48328 1.21592 1.02177 0.96194 0.96471 1.22229 0.99776 0.94851 0.93667 1.22927 0.98406 0.97570 0.97971 1.22850 1.00344 0.98055 0.96787 1.22993 1.00435 0.96719 0.97616 0.78448 0.87355 0.92037 0.92305 0.90604 0.90265 0.88670 0.91457 0.90624 0.92050 0.90588 0.90406 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.53 19.25 29.55 0.57 -4.96 16 2 C -0.11 -2.50 10.88 -37.12 -0.40 -2.90 16 3 C 0.23 5.17 4.91 -6.82 -0.03 5.14 16 4 N -0.45 -11.39 2.60 -117.93 -0.31 -11.69 16 5 C -0.31 -8.75 9.33 -14.94 -0.14 -8.89 16 6 H 0.10 3.03 7.39 -52.48 -0.39 2.65 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 16 8 N -0.86 -22.96 9.48 55.50 0.53 -22.43 16 9 Si 0.92 20.68 29.60 -169.99 -5.03 15.65 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.45 11.09 7.56 -10.98 -0.08 11.01 16 14 O -0.58 -16.15 15.44 5.55 0.09 -16.07 16 15 C -0.12 -2.32 4.13 -27.88 -0.12 -2.44 16 16 C -0.09 -1.46 3.11 -89.81 -0.28 -1.74 16 17 C -0.13 -2.11 7.65 -25.78 -0.20 -2.31 16 18 C -0.14 -1.84 8.09 -25.77 -0.21 -2.04 16 19 C -0.14 -1.84 7.64 -25.91 -0.20 -2.04 16 20 H 0.20 3.37 7.80 -54.10 -0.42 2.95 16 21 H 0.11 2.55 6.44 -51.93 -0.33 2.21 16 22 H 0.06 1.14 6.69 -51.93 -0.35 0.79 16 23 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.08 1.25 7.41 -51.93 -0.39 0.87 16 25 H 0.08 1.46 7.24 -51.93 -0.38 1.08 16 26 H 0.10 1.75 7.73 -51.93 -0.40 1.35 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 273.44 15.07 4.12 4.12 Total: -1.00 -30.77 273.44 -6.09 -36.86 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.31 Total: 4.03 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.17 Total: -10.48 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.22 Total: -34.13 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.07 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.77 -6.09 -36.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300904765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.289 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds